RNA id: XM_043223882.1



Basic Information


Item Value
RNA id XM_043223882.1
length 897
RNA type mRNA
GC content 0.55
exon number 4
gene id LOC122328177
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6929150 ~ 6934573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGAGGAGAACTGCCAGCTCAGCACCTCCATTATCGGTGCCCCCACGTGGCTGAAGGAGGAGAGACATCCTGTCGCTGAAAGAGGAGCCAAAGAAGGCATTctcctgccaacaTGCGGGAAGGGTTTCACGCGCAAAGAAAACTTCAAGACTCACGCAAGAGTCCACGCCGCGGAGAGAGCGTTCACCTGCCGACACTGTGGGCAAACGTTCAGCCGAAAAGACAGCCTTGATGCGCACATGAGAATTCACGGCGAAAGGAAGCCATTCGCGTGTCGTCGCTGTGGAAAAAGTTTCACCTGGAAAAGCCACTTTGACGCGCACGCgagaattcacaccggagagaaaccgtatgTCTGCCAGTTGTGCGGGAAGTCTTGTACGCGTAAGAACCAGCTCAATATCCACATGAAGATCCACAgcggagagaagccgttcagGTGCGCCCgctgcgggaagagcttcaggTATAAATCCAATCTGACAACTCATGTGGgggttcacaccggagagaaaccgttcaCGTGCgctcagtgcgggaagagcttcgcTTACAACATAAGCCTTAGCAACCACGTGAAGACCCACTCCAGAGAAACACTCCAATGCCACCTATGCGAGCGGAGCTTCACGGACGCCGGTCGCCTGAAGAATCACGTGATGGCTCACGCCGGCGGAGAGGCCTTCGTGTGCCACCACTGCGGGAAGAGCTTTTCTAGGAAAGATGTCCTCGGCATCCACATGAgggttcacaccggagagaagccgttcacCTGCCCGCAGTGGCGGGAAGGCAAGCTCTACGTTGGTCTGCCGACCGCCATTAAACTCCAGAAGAAGGAGAAAACAGGACGTAGTGGTGCCAGCAAATCACACAGCTTTGTGTTTTTGGggtaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222750 lncRNA downstream 26335 6899243 ~ 6902815 (-) True G150490
TU222748 lncRNA downstream 42014 6886549 ~ 6887136 (-) True G150488
TU222747 lncRNA downstream 55974 6871652 ~ 6873176 (-) False mfsd6a
TU222719 lncRNA downstream 123710 6799163 ~ 6805440 (-) True G150472
TU222708 lncRNA downstream 213201 6714794 ~ 6715949 (-) False cep70
TU222754 lncRNA upstream 5045 6939618 ~ 6940626 (-) True G150494
TU222764 lncRNA upstream 68387 7002960 ~ 7004118 (-) True G150503
TU222802 lncRNA upstream 70483 7005056 ~ 7005447 (-) True G150538
TU222805 lncRNA upstream 86190 7020763 ~ 7021683 (-) False LOC122327113
TU222806 lncRNA upstream 87828 7022401 ~ 7022697 (-) True G150542
XM_043223881.1 mRNA downstream 48682 6874459 ~ 6880468 (-) True LOC122328175
XM_043223880.1 mRNA downstream 55950 6865223 ~ 6873200 (-) True mfsd6a
XM_043222290.1 mRNA downstream 72252 6846890 ~ 6856898 (-) True nab1a
XM_043223492.1 mRNA downstream 86305 6828460 ~ 6842845 (-) False glsa
XM_043223494.1 mRNA downstream 93924 6823485 ~ 6835226 (-) False glsa
XM_043222299.1 mRNA upstream 27941 6962514 ~ 6971960 (-) False LOC122327116
XM_043222298.1 mRNA upstream 27941 6962514 ~ 6971958 (-) True LOC122327116
XM_043222297.1 mRNA upstream 51992 6986565 ~ 6994634 (-) True LOC122327115
XM_043222301.1 mRNA upstream 63335 6997908 ~ 7002547 (-) True LOC122327118
XM_043222295.1 mRNA upstream 86181 7020754 ~ 7055562 (-) True LOC122327113
TU222752 other downstream 15592 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 39493 6854770 ~ 6889657 (-) False nab1a
TU222740 other downstream 47681 6854770 ~ 6881469 (-) False nab1a
TU222746 other downstream 59604 6867843 ~ 6869546 (-) False mfsd6a
TU222738 other downstream 72287 6854770 ~ 6856863 (-) False nab1a
TU222808 other upstream 95734 7030307 ~ 7055202 (-) False LOC122327113
XR_006247718.1 other upstream 675283 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 675283 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1949548 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 2078975 9013548 ~ 9171931 (-) False nfia

Expression Profile