RNA id: XM_043223899.1


Basic Information

Item Value
RNA id XM_043223899.1
length 1726
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC122328190
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10385363 ~ 10392871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGGCTTGCAAGCAGCTCGGTGTCTCCACCCGTCCTTGAATTTATATAGTGTTGGCCAGTAAGAGCCTACTGATTGTCTTGAGCCACCTGACCTTCGCTGtgttAGTCAGCGAGAGCTCACTGATTGTCTTCAAGATGACCATCATCTCTCTGCTCCTCCTGATCTCTCTGCTTCCACACCTGACCTTTACTGctcGTGTGAAGGTGGGGATAGTGAACGGCAAGGAAGCAAAACCCCACTCCAGACCTTACATGGTTTCTCTTCAGAAGAACTTTAAACACATCTGTGGTGGATTCCTCATCTCTGATGAGTTTGTCATGACTGCTGCACACTGCTGGAAAGGaTACCCAAGTATTCTGACGGCTGTGGTCGGTGCTCATGACTTAAGGAACTGTAATCGTTCATGCAGTGTTGAAGTGATGTCCTACATCCCACATCCATACTATACAATCTGTTCACGTCAGAATGATATCATGCTTTTGAGGCTACAAGAAAAGGTCAAACTAAACAACTATGTTAAATGGATATCGTTAACGAAGAAAGGAGATGTTAATGGAGGCACTCTCTGTAATGTTGCTGGCTGGGGAAGACTGTCGACTGATGGCACACTGAGCAGTGTTTTAATGGAGGCAAACATGACTACAATAAACCAAAGGGAGTGTCTGCATAAATGGGGATCAAAATACTCTGCCTCACAGATGATCTGTGCACATGGTCGTGGAGGATCCTGCAAAGGAGACTCTGGAGGTCCGCTGGTTTGTGGAGACACTGCAGTTGGTGTCACATCTTTTGGGTCCGGAATACGCTGCAATTCACCTGACTATCCTAATGTCTATACTGAGATTTCAGCATTTCTTCCATGGATTCAACAAATTATTcgaaTGTTTGTAAGTGATAGCCTACCGATAGTCTTCATCATGAACATCATCTCTCTGCTCCTGCTGGTCACTCTGCTGCCAAACTTGACATTCACTGttcatGTGAAGGGGGGTATAGTGAACGGCACAGAAGTAAAACCCCACTCCAGACCTTTCATGGTTTCTCTTCAGAAGAACTGGAGACATGTCTGTGGTGGATTCCTCATCTCTGATAGATTTGTTATGACTGCTGCACACTGCTGGAAAAATGAGAAACTAACGGTAGTGGTTGGTGCACACGACTTAAGACAGGACGACAAATCTGTCCGCATTGGTGTGAAGTCCTACCACGTGCATCCAAAATTCAACAAGCACACTTTGCAGAACGACATTATAATTTTGAGGCTGGAGAAAGAAGTCGAACAAAACAAGAATGTAATGAAGATTTCCATATcaaaaaatgagagagagatggaagCTGGTTCTGTCTGCAGTGTAGCTGGCTGGGGAAGACTGAGCTTTAACGGGAGAAAGAGTTATCGTCTCATGGAAGCAGATGTGAAGATCATGAATAACactgaatgcaaaaataaatggaatgACAACTTTTTAGCCCCAGAGATGATGTGTGTCTATGGCCACGGAGGAAGCTGTAAGGAGGATGGAGGAGGTCCTTTGGTTTGTAAAGACACTGCAGTCGGTGTCACTTCCTTTGGTGACCCAGAAATCTGCAATAATCCTGAACGACCTGTAGTTTATATAAAGATTTCTGCATATATTCCATGGATCTGCTCTGTTATTCAAAATGTTGAGTGATTTTTACAATGAAACATAATGAAGCCTTTGTTTAAATGTTCAATAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224164 lncRNA upstream 36477 10347829 ~ 10348886 (+) True G151487
TU224024 lncRNA upstream 196191 10188578 ~ 10189172 (+) True G151382
TU224015 lncRNA upstream 197780 10185635 ~ 10187583 (+) True G151373
TU223986 lncRNA upstream 222917 10151480 ~ 10162446 (+) True G151345
TU224002 lncRNA upstream 247161 10137445 ~ 10138202 (+) False LOC122327864
TU224294 lncRNA downstream 273185 10666056 ~ 10669212 (+) True G151592
TU224310 lncRNA downstream 308751 10701622 ~ 10702328 (+) False LOC122327757
XR_006247710.1 lncRNA downstream 309002 10701873 ~ 10709748 (+) True LOC122327757
TU224309 lncRNA downstream 314528 10707399 ~ 10709755 (+) False LOC122327757
TU224316 lncRNA downstream 317642 10710513 ~ 10711972 (+) True G151603
XM_043223529.1 mRNA upstream 2584 10381507 ~ 10382779 (+) True LOC122327872
XM_043223918.1 mRNA upstream 6673 10376708 ~ 10378690 (+) True LOC122328210
XM_043223923.1 mRNA upstream 11237 10372204 ~ 10374126 (+) True LOC122328213
XM_043223924.1 mRNA upstream 14850 10369095 ~ 10370513 (+) True LOC122328214
XM_043223920.1 mRNA upstream 23154 10360126 ~ 10362209 (+) True LOC122328211
XM_043222364.1 mRNA downstream 5398 10398269 ~ 10399548 (+) True LOC122327181
XM_043223452.1 mRNA downstream 7555 10400426 ~ 10401727 (+) True LOC122327821
XM_043223451.1 mRNA downstream 14274 10407145 ~ 10408483 (+) True LOC122327820
XM_043223901.1 mRNA downstream 17386 10410257 ~ 10412454 (+) True LOC122328194
XM_043223903.1 mRNA downstream 20478 10413349 ~ 10418216 (+) True LOC122328195
XR_006247720.1 other upstream 391922 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 421729 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 421729 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 421729 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 491874 9888200 ~ 9893489 (+) False borcs8
XR_006247780.1 other downstream 316173 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 413181 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 423264 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 526189 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 925818 11318689 ~ 11323940 (+) False mier2

Expression Profile