RNA id: XM_043223900.1


Basic Information

Item Value
RNA id XM_043223900.1
length 660
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC122328192
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10394012 ~ 10396169 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCCATCATCTCTCTGCTCCTGCTGATCTCTCTGCTTCCACACCTGACCTTCACCGCTCTTGTAAATGTGGATATAGTAAATGGCCAGAAAGCAGAAGCTCACTCCAGACCTTACATGGTTTCTCTTCAGAAGAACAAGGAACACATCTGTGGTGGATTTCTCATTCACAACCAGTTTGTCTAGACTGCTGCAcattgcagaaataaataagactTTAGCAGTATACTGACAGCTGTGATTGGGGCACATAACCTAAAAGACAAGAACGAGGGGTCTGTCCGCTTCGGAGTGAAGTCCTACCACAAGCATCCAGGTTACAGACCTAAGAGTCACACATACCAGAATGACATTATGCTTTTGAGGCTGCAGAAAAAAGTCAAGGAAAACAGTAAAGTcaagattattaaaatacaaacacaaaaggaagacATCAAAGCCGATTCTGCCTGCAGAGTCGCCGTCTGGGGAAGCCTGAGGACTAATGGCTCAGCAAATGATCGTCTAATGAAGATGAGGGTGTATGTAATGGATAACGCAGAATGCAAAATCAGATGGGGAGAGATCTACTCGATCCCGAAGATGATGTGTACATATGGCATTGGTGGATTCTGCGACCCTACATTCACAGTGCGCTACACAGTATTTAACacagaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224187 lncRNA downstream 18052 10375641 ~ 10375960 (-) True G151508
TU224186 lncRNA downstream 18397 10375173 ~ 10375615 (-) True G151507
TU224127 lncRNA downstream 144170 10244918 ~ 10249842 (-) True G151457
TU224138 lncRNA downstream 199155 10189830 ~ 10194857 (-) True G151468
TU224106 lncRNA downstream 321120 10053918 ~ 10072892 (-) True G151439
TU224252 lncRNA upstream 46318 10442487 ~ 10442738 (-) True G151569
TU224270 lncRNA upstream 59202 10455371 ~ 10455631 (-) True G151572
TU224329 lncRNA upstream 313033 10709202 ~ 10709750 (-) True G151612
TU224336 lncRNA upstream 319256 10715425 ~ 10715957 (-) True G151616
TU224427 lncRNA upstream 387469 10783638 ~ 10784242 (-) True G151668
XM_043223055.1 mRNA downstream 72349 10282022 ~ 10321663 (-) True polrmt
XM_043223518.1 mRNA downstream 206425 10183038 ~ 10187587 (-) True atp5f1d
XM_043223516.1 mRNA downstream 220695 10151462 ~ 10173317 (-) False midn
XM_043223515.1 mRNA downstream 220696 10151462 ~ 10173316 (-) True midn
XM_043222482.1 mRNA downstream 313917 10076911 ~ 10080095 (-) False cirbpb
XM_043223507.1 mRNA upstream 24341 10420510 ~ 10422354 (-) False micos13
XM_043223306.1 mRNA upstream 70958 10467127 ~ 11650822 (-) False LOC122327734
XM_043223305.1 mRNA upstream 70958 10467127 ~ 11650822 (-) False LOC122327734
XM_043223304.1 mRNA upstream 70958 10467127 ~ 11650822 (-) True LOC122327734
XM_043223338.1 mRNA upstream 230617 10626786 ~ 10650949 (-) True zgc:165603
XR_006247701.1 other downstream 72349 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 430386 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 891006 9498680 ~ 9503006 (-) False gpx4a
TU223882 other downstream 892330 9498680 ~ 9501682 (-) True gpx4a
XR_006247698.1 other downstream 1252153 9013553 ~ 9141859 (-) False nfia
TU224207 other upstream 22958 10419127 ~ 10422335 (-) True micos13
XR_006247709.1 other upstream 777974 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 783535 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 952211 11348380 ~ 11348451 (-) True trnaq-uug_21
TU225293 other upstream 1649300 12045469 ~ 12049531 (-) True si:ch211-117l17.6