RNA id: XM_043223904.1


Basic Information

Item Value
RNA id XM_043223904.1
length 366
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC122328196
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11792550 ~ 11793165 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgaaaaaaccattttttttttttaaatctccctGCAGCGTCTCTGCAGCTGTGTCTGCTATTCAGAAGTTAACACGCGTGAGGGTGGTCGACAACAGCGCTCTCGGAAATGCCCATCACCACCGTCCACCAAAAGTCATTCACGTATACACCAAGAACGGAGTAGGTAAAGTGGGAGACAAAGTCTTGCTAGCCATTAAAGGACAGAAGAAGAAAGCTCTCATAGTGGGCCACAAGATGCCTGGAGATCGAATGACCCCACGCTTCGACTCCAATAACGTGGTTTTGATAGAAGAGAATGGAAACCCCACAGGAACGAGAATAAAAGTTCCTATTCCGACGAATCTGCGCAAAATGGAGGGAGAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247734.1 lncRNA upstream 5839 11777483 ~ 11786711 (+) True LOC122327899
TU224782 lncRNA upstream 240239 11551893 ~ 11552311 (+) True G151906
TU224781 lncRNA upstream 240761 11551466 ~ 11551789 (+) True G151905
TU224779 lncRNA upstream 241680 11550194 ~ 11550870 (+) True G151903
TU224670 lncRNA upstream 324276 11466417 ~ 11468274 (+) True G151841
TU224829 lncRNA downstream 33400 11826565 ~ 11835103 (+) False LOC122327134
TU224830 lncRNA downstream 33400 11826565 ~ 11835103 (+) False LOC122327134
TU224834 lncRNA downstream 73917 11867082 ~ 11867541 (+) True G151936
TU224886 lncRNA downstream 199425 11992590 ~ 11992800 (+) True G151972
TU224891 lncRNA downstream 213103 12006268 ~ 12006582 (+) True G151976
XM_043223519.1 mRNA upstream 92 11787586 ~ 11792458 (+) True LOC122327862
XM_043223314.1 mRNA upstream 256809 11522004 ~ 11535741 (+) True LOC122327737
XM_043223313.1 mRNA upstream 260449 11522007 ~ 11532101 (+) False LOC122327737
XM_043223315.1 mRNA upstream 279615 11507461 ~ 11512935 (+) True LOC122327738
XM_043223316.1 mRNA upstream 279615 11507468 ~ 11512935 (+) False LOC122327738
XM_043222519.1 mRNA downstream 29773 11822938 ~ 11825207 (+) True LOC122327289
XM_043222318.1 mRNA downstream 34134 11827299 ~ 11835134 (+) True LOC122327134
XM_043222486.1 mRNA downstream 204055 11997220 ~ 12003856 (+) True b3galt2
XM_043222488.1 mRNA downstream 204055 11997220 ~ 12003856 (+) False b3galt2
XM_043223501.1 mRNA downstream 226077 12019242 ~ 12021636 (+) False glrx2
XR_006247707.1 other upstream 468610 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 870622 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 955185 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 955185 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 1083440 10709044 ~ 10709110 (+) True LOC122328232
TU224828 other downstream 29769 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 34179 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 217304 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 255253 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 445617 12238782 ~ 12265692 (+) False LOC122327127

Expression Profile