RNA id: XM_043223930.1


Basic Information

Item Value
RNA id XM_043223930.1
length 1703
RNA type mRNA
GC content 0.48
exon number 6
gene id hsh2d
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8391249 ~ 8394587 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATGGCctaattaatattgtattaagtCGCGAGACGTGTCTCGCGCGCAAATCAACTGCACTCGCCTGTGAACCGACAACAAAGATAGACATACTTTCAGTTCACAATCTGAAATGTGTCGTCTTCCTTTTGTTTAAACCACACCCCAAACAGTTTTAACAGGTGAGGTCACCTCGGCTCCCGTCACTGTACCGTGTGACTCGGCAGGAGAAACCGGATGTCATGGCTGTGCCTTTACCGCATGACAGCAGTAATGCAGCATTCGACTGGTTCACTGAATTCCATCGTACCTGCATCCTAAAGAACGGGATCGTTCCAGAATGGTTCCATGGAATAATATCCAGGAaGGCTGCGGAGGACATGCTGATGTGCAAACCTCCTGGTTACTTCCTCATCCGCGTCAGCGAGAGCAGAGTGGGTTGTACGTTGTCGTATCGAGCTGAAGATCGCTGCAGACACTTCATGATCGACGTCTTGCCAGATAACCAGTATGTTATAGTGGGAGAAAAGACGTGCTTCTCTTCCCTCCATGACTTGGTGGCCTTTCATCGAAGAAACCCCATTCTCCCCTACAACGACCTGCTCACCGTGGCCTGCGAACAGGGTGGTAAAAATAACTACGCTGAGTTGTTGTTTCCTCAAAAGAAAGATGCAAGCCCCGGACAGGTTGAATGGATGCATTTTTCAACTCCGACCCCTTCGGCTCATTCAGATATCCCTGAACAAAACCCGACTTCGCCGCTCCAAAACGAATCATCTGCGCTACCTACAAGTCCTTCTGCGAGACTGTATCCCAGCTTGGAGACGGAAATGAGCGCTTTGAATCTGCAGAGCATGaatCAGCCAACAAAGCCCACTGCAAAGCCTCGAACAATATTTACGCCCAAGCCCCCAGCCGAAGACACGCCGCCGCAGTTACCGCCCAGAGCGTGCCTGCCAAACCGCCCGCAAGCCACCGCGGACGCTGACAGATCGCAAGGGGCGACGCCGGCAAGCTCTGACAGACATCAGATCCTACCCGAAACCCCCGTCGAAGGCCGGACCCAGCAGAGAATCCAGCAACCTTTGAAACCGGTGGTCTTGGGCCTGGCGCAAATTAAGAAGAAGCTTAAAAAGAACCGCTCCAAGGAGCACATGTATGAGGAGATCGCTAAAGATGCGGGTCAGGAAAACGCTTTCTCTGCTTTGGAGAGCGGTAACGCGAACCCTAAACAACCGGAGGAAAACGACTATCAGGAATTAACCGAAACATGCACAGTCGAGGGCCGTCGGGCATCTGACGGGATTCCCAACTTTGCAGATAGACAGTTACCGCTGGAGTACTTAAATCCACCTCCTTTCGCACCTGGTTATTagataaaaacataaagacGGCtggctttactttttttttgtcaatgtcACTGAATAACGTGCCAACATCGCTCTTCTTTGTTGTGTTGTTCTGTTTCGCTATGCTGCACTTCAATTTCTGACTCAATGCATTCCGAAGGTTCGTCGTCTGGAAAAACCTGTTGGACACggtaaaatatttgaatatattgatAACAGAGTTGCGCCTGAGGGCATGAGTTTGAATATGCTACTGGATTATGCTTCCTAAAATCTGGCACTTTAcataaatgaatagaaaaaacaacaaattgtaaatatttgctttttactGCAGTTGTTCAATAAATGTACAGGCGATGCTAGAAA

Function

GO: NA

KEGG:

id description
K23699 HSH2D; hematopoietic SH2 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223217 lncRNA downstream 100589 8290346 ~ 8290660 (-) False tmem264
TU223173 lncRNA downstream 118078 8268848 ~ 8273171 (-) False G150785
TU223491 lncRNA upstream 14729 8409316 ~ 8410129 (-) True G151017
TU223494 lncRNA upstream 17856 8412443 ~ 8412693 (-) True G151020
TU223490 lncRNA upstream 25047 8419634 ~ 8420740 (-) True G151016
TU223485 lncRNA upstream 73884 8468471 ~ 8469252 (-) True G151015
TU223507 lncRNA upstream 104539 8499126 ~ 8499361 (-) True G151029
XM_043223925.1 mRNA downstream 1114 8375292 ~ 8390135 (-) True ankmy1
XM_043222250.1 mRNA downstream 82836 8305664 ~ 8308413 (-) True rpp21
XM_043222278.1 mRNA downstream 98041 8286372 ~ 8293208 (-) True tmem264
XM_043222457.1 mRNA downstream 177866 8200017 ~ 8213383 (-) True LOC122327250
XM_043223885.1 mRNA downstream 224281 8160428 ~ 8166968 (-) True LOC122328182
XM_043223932.1 mRNA upstream 141 8394728 ~ 8407532 (-) False tpm4a
XM_043223933.1 mRNA upstream 141 8394728 ~ 8403298 (-) True tpm4a
XM_043223931.1 mRNA upstream 929 8395516 ~ 8403300 (-) False tpm4a
XM_043223934.1 mRNA upstream 946 8395533 ~ 8407386 (-) False tpm4a
XM_043223227.1 mRNA upstream 36605 8431192 ~ 8449524 (-) True si:ch1073-396h14.1
XR_006247718.1 other downstream 772851 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 772851 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1336047 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 1477691 6906000 ~ 6913558 (-) True G150492
TU222746 other downstream 1521703 6867843 ~ 6869546 (-) False mfsd6a
TU223633 other upstream 489534 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 618961 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 618961 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 618963 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 618963 9013550 ~ 9141867 (-) False nfia

Expression Profile