RNA id: XM_043223935.1


Basic Information

Item Value
RNA id XM_043223935.1
length 2716
RNA type mRNA
GC content 0.49
exon number 21
gene id capn2l
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12722862 ~ 12732856 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGCGCTTTCACTGTTGTTACGGAGAGGTCCAGAGATGTCAGGAATCGCAGCGAAGCTCCAGCAGAACCGGGCGCGGGCAGCGGGCATCGGAACCAACGCTCAAGCCGTGAAATTCCTCAACCAGGACTACGAGGCGCTCAAGCGCGAGTGTCTGCAGGGCGGACGCCTGTTTCAGGATGACACGTTCGAAGCAAGCGCATCCGCGCTCGGGTTCAAAGAACTGGGACCAAACTCCTCTAAAGTGCGAGGGGTTGAGTGGCTGAGACCAAAGCAACTGACATCCAACCCAATGTTTATCAGCGGAGGAGCGTCCAGAACTGACATCTGCCAGGGGGCTTTGGGTGACTGTTGGCTTCTAGCTGCCATCGCGTCTCTTACCCTCAACCAGGACGTGTTCGCTCGTGTGGTCCCGTCTGGACAGACTTTTGACGGAGACTACGCTGGAATATTTCATTTCCAGTTCTGGCAGTTTGGTGAATGGGTGGACGTGGTCATTGACGACCGTCTTCCTACAAGAAACAAAGAGCTGCTGTTCGTCCACTCCGCCGAGGGCTGCGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCAAAGGTGAATGGCTGCTACGAAGCTCTGTCTGGTGGCTCCACCACCGAGGGCTTTGAGGACTTCACTGGAGGCATCGCTGAGGTCCACGAACTAGCAAAAGCAGGTCCAAACCTCTTCAAAATCATCCAGAAGGCTTTGAGCTGGGGCTCGCTGCTGGGCTGCTCCATAGATATCACAGACTCAGCTGATTCAGAGGCCATTACTAGTCAGAAACTGGTGAAAGGACATGCCTACTCGGTTACAGGAGCCGAAGAGGTGGAATACAGGGGCAACTTAACCAAACTGATCCGCATCAGGAACCCCTGGGGGCAGGTGGAGTGGACCGGAGCCTGGAGCGATGGGTCATCAGAATGGAGGCAAATCAGTGACAGCGAACGTGAGAAACTGAGCTGCAAAGCAGAAGATGGAGAGTTCTGGATGTCATTCTCTGATTTCCTGCGTTATTACTCGCGGGTGGAGATCTGTAATCTGACCCCTGATGCTCTGACAGATGACAGCGTTAATAAGTGGGCTCTGTCCAAGTTTGATGGGAACTGGAGGAGAGGATCAACTGCTGGAGGATGCAGGAATTACCCAAACTCGTTCTGGATGAACCCTCAGTTTTTGATCAAGCTGGAGGAGCAGGACGACGACCCGACCGATAACGAAGTAGGCTGCAGCTTCGTTGTGGGTCTGATCCAGAAGAACCGCCGCAAAATGAGGAAAGCCGGAGAGGACATGCACACCATCGGCTTCGCCATCTACGAGGTTCCTCACGAGTTTGTCGGGCAGAGGAACGTCCACCTGGACCGTAACTTCTTCGTGAGACATGCTTCAGCGGCCCGCTCTGAGACCTTCATCAACCTGCGCGAGGTTTGCTCTCGCTTCTGTCTGCCTCCCGGAGAGTATCTCATCGTACCCTCCACCTTCGAGCCCAACAAGGACGGAGACTTCTGCGTTCGCATCTTCTCTGAGAAACAGGCAGACTTCCAaGAGCTTGATGACTCTGTCGCCTGCAACGTTCCTGAGATTAATGTGAAGGAGGGTGATATTGACAGCCGGTTCAAGAATCTGTTTGGACAGCTTGCTGGGGCAGATGCTGAAATCTCAGCATTTGAGCTGCAAAATATCCTGAACAAAGTGATATCTAAACgtaaaGACATTAAAAGTGATGGATTTAGTTTGGACACTTGCCGCAACATGGTGAACTTACTGGATAAAGACGGCAGTGGAAAACTGGGCATCGTCGAATTTAAGATTCTCTGGACTAAGATTGAGCTGTACCTGGACATCTTCTGTAAAGCCGACAAGGACAAGTCCGGCACAATGAGCTCCACGGAGATGAGGGAAGCCATAGGGAAAGCAGGCTTCTCTTTGAACAAGGCCCTCCACCAGATCATGGTCGCGCGCTACAGCGACGACGAGTTCACCATCGACTTTGACAACTTTGTGGGCTGCATTGTGCGCCTTGAGAGCATGTTCAAAACGTTTAAAATGCTGGACAAGGATAAGAGCGGCACGATAGAGCTGAGcttttttgagTGGCTGAATTTTTCCATGCTTTGAGGAAAATGGGCGGCAGATTCTGGACGGCTGGGTGGAGATCTGAAGTTTCTTTCACGCTGCACAGACACTGACATCCCTGGAATATCTCACACGTGTCATAAAAACAATAGTTCATGTTCTCCAGATTGAGACCTCCGTGAAAAACGGATGGATTTCAAGCTCCTGCGCTGCGTAATAGAATTCATATTATGGCGGTTCACTGAAGGGTATTTACTAGTACAGATGACAaacatatatgaaaaaatatgtctctatttaaaaaaaaaaatgtaatcataagcaaaagtaaataaatcttGTGACTTTTAAGAACAGTGACCTTGAGCATCATGTCTTGCTGTAAATACAACTAAGTTTAACTAACTtataagcaaatatttttgtggaagaaACACTATTTAAGCAAAAACCACCAATTTTACTTAAATCGTTCATGTGCAATTGTGTGTGTTATGACAACAAACAAACTCGTGTTTGCAGCGACGCATTTATTAACGGAGgttaaaagcataaatgtgaACTGATGGCACAaatcatgtaataaaaaatatcacttGATTTAAAATACTGGGTAaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225126 lncRNA upstream 66433 12655949 ~ 12656429 (+) True G152122
TU225074 lncRNA upstream 67788 12604088 ~ 12655074 (+) True G152083
TU225118 lncRNA upstream 80367 12642057 ~ 12642495 (+) True G152115
TU225101 lncRNA upstream 93562 12589913 ~ 12629300 (+) True G152101
TU225089 lncRNA upstream 102186 12580839 ~ 12620676 (+) True G152092
TU225153 lncRNA downstream 14725 12747581 ~ 12747956 (+) True G152140
TU225156 lncRNA downstream 21490 12754346 ~ 12793226 (+) True G152142
TU225195 lncRNA downstream 168414 12901270 ~ 12970358 (+) False G152161
TU225211 lncRNA downstream 215046 12947902 ~ 12956791 (+) True G152173
TU225193 lncRNA downstream 233467 12966323 ~ 12970358 (+) True G152161
XM_043223524.1 mRNA upstream 530 12713295 ~ 12722332 (+) True LOC122327868
XM_043223525.1 mRNA upstream 23826 12688924 ~ 12699036 (+) True LOC122327869
XM_043223532.1 mRNA upstream 64147 12658064 ~ 12658715 (+) True mrps28
XM_043222259.1 mRNA upstream 72788 12645181 ~ 12650074 (+) True LOC122327087
XM_043222265.1 mRNA upstream 180178 12536097 ~ 12542684 (+) False dnaja3b
XM_043223530.1 mRNA downstream 39695 12772551 ~ 12783452 (+) True LOC122327873
XM_043223132.1 mRNA downstream 52969 12785825 ~ 12812611 (+) True adcy9
XM_043223131.1 mRNA downstream 80305 12813161 ~ 12852216 (+) True crebbpa
XM_043223166.1 mRNA downstream 119585 12852441 ~ 12862677 (+) True slx4
XM_043223172.1 mRNA downstream 130464 12863320 ~ 12875334 (+) False tmem186
TU225049 other upstream 298940 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 298940 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 377112 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 377112 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 428145 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 374650 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 376839 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 376845 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 376954 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 376959 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile