RNA id: XM_043223942.1


Basic Information

Item Value
RNA id XM_043223942.1
length 4274
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC122328225
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12473253 ~ 12478935 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGCCATAGATTCGTGACGTGTGTAGTaatttatctatctatttatctatatatatgaaGTTAGTATCACTAAAGAAGGATACGTTTTAGCTGTGGTTTTGTTCACCTGTACATCACAgggacgaaaaaaaaaaaaagagcctttTCAGCTCCACCCCTACAACCAGTTGCTAGGTATGAGAGACAGGTATTTCAGCAGGGAATATACGTGAGGCAGTAAAGTCGTAGCCAAACTTCCCAAAATGGCTACTAAAGACATTTGGCAAAGCTTGGCTCAAGATAATGTTCCATTCATGCGTCACATTAAAAGGACATTTATTCTGCTGCTTACAGTAGCATTGTTATTATCTGCTGTTGCTTATGTCTCTGATTTCTCTTTTGAGACAATTGCATTCTCTCAAACCTGGTTGATTAAAATGATGAATCAGACTCATAATAAGATAATTAACAGCACTTCTCCTGATCGTACTCAAAAGGATTTATTAGCACCTTTGCCCAATCAACAAATCCAACCAAGAGGTACAACCGTTGCACAAACTACAGACATTCCTATCTATCATCATGTGGCTCACCCACGCAACTATCATTTCACTTTGGATGAACCTGATAAATGTAGTCAGTTGGATCCGTTCCTGGTCTTTATGGTCCCCGTGGCCCCCCATCAGCTGGAGGCTCGTAACGCCATCCGGAGCACATGGGGGAACGAGAGCTCAGTGCAGGGAAAAGCAGTGCTGACTCTGTTCTTGGTGGGTTTGTCTGGAGGAGCTGAAGCTCAACAGCAGCTGGAGGAAGAGAGTCGACAACACAGAGATCTACTGCAGAGCGACTTTGTGGACTCCTACTTCAACCTGACCATAAAGACCATGGTGATCATGGACTGGTTGGCGACTCGCTGCCCTCAAGCAACTTACGCTATGAAGGTTGATTCAGACATGTACATAAACCCGGAGAACCTGATGAGCCTTTTATTGTCACCCAACACACCCAGAGAGAACTACATCACAGGATATTTGATGTGGGACCGGCCTGTCGTCAGAGACAAAAACTCGAAATGGTACGTGGCAGAGGAATTGTACCCAGAACCAAATTACCCCACATACCTGCTTGGAATGGGATATGTTTTCTCCAATGACCTGTCGGGAAAAATAGTTGAGGCTTCCAAGGAAGTACAGCCCTTTAACATAGAAGACGCATATGTGGGTGCTTGTCTGAAACAATTGGGTGTCGCACCCTCATCTCCCCCAGACCCTTCACAGTTTAGAGCCTATCTGGGTCAATACTTTAGAGAAGATTTTTTAAGAGTTATTACAACAATCCTGGGATCCCCACAGCAGCTAATAGACATTTGGAAGGATGTAAAGAGGCCAACATAAAAGTACTGgagcacaaaaaaactaaaaccagaTTTCAGTTTTCAAAGAGAAGTCTATTTAAGGCAtcagtgaatgtttttttttaaacagaatgtCTATTGGGAGCCTGCCttgttggcagaggctatttacaaTAACTCCACCGAACAATGGGTGATTGGGCTAGTCACgattataaaaaatgaaaaataaagtattggGTAGGTGTAGGAAGTGCTTTATTGTACCAATAAGGTGGCCTTcatttaaaggtgctgtatgtaggattttgactctactaaagcataaaagtactataatatgtttgcagatatttaagaaacatgctaaattaacaaaaacaatgccACATTCACGTATTCTCATTTGAAAATATGCGTTCCGACCGGAATTTCAGCTATTgatttggtttgtgaaacctgCCCATTGCCAGTTTACCCTATGGTGTTTGTGAGccctgggttgccagttggtggaaaacaCAGCACACTTCATTTTTTCACTGCTATTTTAACATAGTGTACAGAATCGATAGCTGTTTGCATTAAAAgctaatgctttttttctaaaagctGAGACTGGGGTAATGCCACACGCATGTGGATACGCTGACTCTATATAGACGGGGCCAGCCGCTCatgcaaaatgcattcttgctgaaaaaACATCTCGAGGcacatttttaaaggttaaCTGATTTTACCAGGAAATGGGATTTTAAAAACAGGCGGAAATGTCAAAGAAAGCAACGATGTTCATTTACGTAGCAGCATGGTGGAAAACAAATGGGTGTGCAAAATAATATAACCTTTCGCAAATCTATTTCAACgtcaatgtacatttttatggaaTAAACACAAAAGCTTATACTAGTATACCTAtgtatacacaaatacattctGCGTAATAACGATTTTAAAGGTGCACTAGGTGATCGTCTTCagaaaagtttttgttattGTTCTAAGTGgtctaaatgtatttgtattaaatctGTGGAAGGCGTAGAACCAAGAAATGTTCGTAGGACCAATGAAAAGCCTTGTAATTGGCTTTATACCAGCCTGTGAACTTCTGAGCGCTTTCACAACGAGAACAGCAGATGAACATCAGCAACCCCATCTTCCCTCCTGGTATTGTAGTACTTAAACTACTAGTTTCCCAACAGGTGAATGTCACATGATGCAGCCCAGCAGTTCCCAATTTCAGTCCTTGTGCCCCCCGCTctatatattttgcatgtctcttTTAGATAACACACCCAGTTCAAATAACCGGCTCGTCAGGAGTGAGCTACATGCGTGAACTGTGTTCCTGGTTTACGGATTTGCGCTGCACAGCGTCTACCAAACTAGCGTGAAGTGTGACGCCTCcggaaataatttaaatttactcCTCACACACTTTTGTATGGAAATATACACACTTCGCTTGGAACTGTAATCGTGGCGGAACAATATGGCACCTTTAACTGAAGGTGTTTGCAGagcaaatttatttttcatttatctctCTATTGGGACAGGTTGTCTGTTTATCTTGTAAATTGAAACTGTAAGCTAATTTATTTCCCATTTATGTTGGTCAGAACAAGGGTTtgatttatgtgcatttttattgtttcgTGGGTTTCAAACCtgatgtaatctttttttttgtagtcttTAAAGTTAAGTTTCCCTTGATGTTCAATGTTCGATGAATACTTTAACTGAAATGTGCCTCACCAGTCTAAAAAGAGTATTTAGTGcagatgataaatatatatatatatatacacacacacacacaatttatttttgtttgtgaacTTTGTGTCATTACAATCAAGGTTTCATTTTACTTTTGGTTCATGTTCTTAAACAATGATTTTAgcctgcatttatataaaaccctcttatttatatttctaaggAAATTTAGTGATGCATTATTCTCAGTTGTAGCCTCTCATACTGGAATTATGGAAATCAGGATACACCCAGTTTTGACTATGCTGCAAGTAATATGAATTAGATTACCTTTACTAAGTACACAGTTGGTAATATGAACACACGGTTCTAAGTTTCTAAGTAATGTAATATGAGATGATGGTAGATTATTAAAACTTCCTGGTTTCCTCCACAAAAAGCTAAAGTATTTCACCATTGGCTTTGTGACCAATAAAGGTCATTTCATCAATCTAGAATATTAATGAATTTTGCATgtctattttgcttttattcaaaacatacctaaccagcatatggtggttttttcagcagggaatATAATCACCATCCATCTTATTTGTATCCTGCAGCACCTGGATACTAGACCGCAAGCTTTTAAACAAAACGCTGATCCTTTTCTGAAGATAAATCAGCTGTTCGCACAGTAACACAACATCTAATGGGCCTCTTTTTacttcagtgttttcattttgtcagaaaaagtaatgttttcagACAGTGGTGTTTAAGGATCATTTTATAATTaggtgtactgtatatatggaatttgaaaatgtgaaaagagagaaagatttcctttttttctcaaaaaagcaAACACTAATACCGTTAGTCAAGCTCAGGGTTAgttggttttggttttttttttattctaaaagcaGATATATTCTGGCTATGTTATAATTATGTTACTGACAAAAGTATTCATAGCTTGGAAAAATACCTAGAATTTACATGCTACACTGCACATTGCATTgtaatgtgaaaatgtaaaaaggcaTAGTTTTCACAAAAGTGATTAAATCGTATTTTCTCAAGACAAATTTGTAtattctgttttaaaagaaaaatacctTGAGGGACAAAAGTAACAGTGGGCAATGTCTTAACACTAACCATGTTATACAGCAGGCAACTGagtattacaaaataaaataaaataatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225052 lncRNA upstream 46281 12426756 ~ 12426972 (+) True G152068
TU224994 lncRNA upstream 141408 12306554 ~ 12331845 (+) True G152028
TU224903 lncRNA upstream 205758 12241277 ~ 12267495 (+) False LOC122327127
TU225093 lncRNA downstream 100347 12579282 ~ 12617819 (+) True G152095
TU225094 lncRNA downstream 100347 12579282 ~ 12580339 (+) False G152095
TU225089 lncRNA downstream 101904 12580839 ~ 12620676 (+) True G152092
TU225101 lncRNA downstream 110978 12589913 ~ 12629300 (+) True G152101
TU225074 lncRNA downstream 125153 12604088 ~ 12655074 (+) True G152083
XM_043223486.1 mRNA upstream 1918 12469118 ~ 12471335 (+) True LOC122327840
XM_043222229.1 mRNA upstream 48551 12421681 ~ 12424702 (+) True LOC122327055
XM_043222228.1 mRNA upstream 51596 12414582 ~ 12421657 (+) True LOC122327054
XM_043223781.1 mRNA upstream 61412 12408361 ~ 12411841 (+) True LOC122328076
XM_043223780.1 mRNA upstream 65021 12398320 ~ 12408232 (+) True aars2
XM_043223457.1 mRNA downstream 6270 12485205 ~ 12503977 (+) True vasna
XM_043222265.1 mRNA downstream 57162 12536097 ~ 12542684 (+) False dnaja3b
XM_043222266.1 mRNA downstream 57162 12536097 ~ 12542684 (+) True dnaja3b
XM_043222259.1 mRNA downstream 166246 12645181 ~ 12650074 (+) True LOC122327087
XM_043223532.1 mRNA downstream 179129 12658064 ~ 12658715 (+) True mrps28
TU225049 other upstream 49331 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 49331 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 127503 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 127503 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 178536 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 628571 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 630760 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 630766 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 630875 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 630880 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile