RNA id: XM_043223943.1


Basic Information

Item Value
RNA id XM_043223943.1
length 1933
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC122328226
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2876058 ~ 2878821 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCATCGAGAGGGCTAGTGCACAGTCATGGCTTGTGCAAAGCAAGATATAGGTACTTTTGACCAGAGCTTGGAAGCCGAGAAAGATTTAGTTGAGGAAGATCAGAATGCCGTCAATGTTGCTCCTGACACAGTGCTCCAAGTGGAGGGGGAGTTGTTCTTTGTAAACCGTGAGCAACTGGCCCATCTGAGTCCCTACTTCCGAGCCTTGTTTTTTGGGGGTGGTCGGGAGAGCACCAGGAAGCACATTGAGATTAAGGGAGTTGGACTGCAGCAGTTCCACACACTAATGGAATTTACAAAGGACTCGAAGCTGAACATAGACTGCAAGAATGTCCTTGACATTCTGGAGGCTGCCGACTTCCTTCAGCTGGATAGGGCTCGGTTACTCTGCTGCAAGTTCTTGGAAAGACAACTGCATCTCAGTAATTGCTTGGGAATGATGGCCTATGCTTGGCAGCTTGGCTGTCTGGACCTCTACGCAGCAGCCAGGGATGTAGTCTTGACACACCTACCTGCCTTAGCCTCCGAGCAGGACTTTATGTTTCTTCCGAAGGAGAGTATTGCTGACCTACTTGCTAGTGACAACTTAAGCATTCCCAAGGAAGATGTGGCTCTTGATGTGGCCATTCGCTGGGCAACATTTGACCCAAGTCGGGAAGAGGACTTCATGGAACTAGTAGGTCTGGTTAGACCCGAGTGTTTAAGTCTACCCTACATTACTGACCTTCTGACCAAGATAAACAGTTCAGACCCACGTGCTAAGCTTATTTGTAGACTGAACGATAACTTGCCAAGCAGTTGGACTATAGGCAGGTCCATGCCTAGAACTCGCTCAAGGGAAACCCTGTTTGTTCTCGGTGGACCACATGAGCAAGAAACACAGCTGCTGTATCAGTTTCACCCCTACAGTGGAAGGTGGCAATCCCATCCACCCCTGCAAAAGAAGTGTCTCACACAGTATTCCGTGGCAGTAATAGGGGACAACATAGTAGTGACCGGAGGCTACTTCCGGGATGTGTTATGGTATAGTGTGGACTGGGTGAGCATTTACGAGCATGTAAACAAGCAGTGGGTGGACGGCCCAGCAATGCAGAAGTCCAGACACAGCCACTGCTCAGCAGCTCTGGAGTTCCAGCTGTTTGTGTTTGGCGGTAGCATGGACGAAGGGCCTGTGGCCGACGTCGAGAGGCTGGTTTTGGGAGCCATGGAATGGGACACCGTCAGCCCCATGGTGCGGGCTGTGGAAAGGGCAGCAATTGTCACTTTGAGGACTAGTATTTATGTGGCTTGTGGTCTAGATGAGAATGGGGATGTTTACAGTGGGATTCAACGATACAGACCAGCAGCTGATCAATGGGATGTGGTGTCCTATTCTCCATTTCCACGttacgACCTTCTTGCAACAGAGCTAAATGGTGCCCTCTATCTCCTGGGAGGACAGGCTCTGCGCTTCGACATTGACACGGATGAGTGGACCGTTCTTCAAGAGGACTGTCTGGACAATAAATTCTTCACAGGCTGTGCCACAGTTAACGGGCAGATTTACATACTCAGCGAGAGGAAGATAAACAAAACGTACCCAAACATGATTCTACTGGACCCTTACATTGACACTTGCTTAGAAGTTGATGATAAAATACCCTGTCCTGTCCCCATAAGAGGTTGTATCACAATGCATGTCAATCCTTTCTAAAGCCACAATGTCAACACTATTCCTTCCTTAAATGTGAGGACAATTACTAAGCCAATGCAGGAACGTATTGTTCAACAAAGTTgaacaaatgttaaataacaaATGTTGAACATTGTTATCAACAAAGATAATCATattctaaatcatttttattgttatttaaaaggTCACAGAGAAAAATGGTGAAGCAAGTATGCAACATTAagagttttattatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220155 lncRNA downstream 116371 2698113 ~ 2759687 (-) True G148860
TU219965 lncRNA downstream 283329 2591572 ~ 2592729 (-) True G148749
XR_006247728.1 lncRNA downstream 312835 2527094 ~ 2563223 (-) True LOC122327855
TU219961 lncRNA downstream 313501 2527434 ~ 2562557 (-) False LOC122327855
XR_006247777.1 lncRNA downstream 351756 2518437 ~ 2524302 (-) True LOC122328197
XR_006247685.1 lncRNA upstream 17139 2895960 ~ 2898650 (-) True LOC122327605
TU220234 lncRNA upstream 162631 3041452 ~ 3045417 (-) True G148906
TU220258 lncRNA upstream 179189 3058010 ~ 3058631 (-) False LOC122327369
TU220267 lncRNA upstream 223758 3102579 ~ 3102897 (-) True G148927
TU220496 lncRNA upstream 314467 3193288 ~ 3194804 (-) True G149071
XM_043223082.1 mRNA downstream 26499 2784678 ~ 2849559 (-) True fbn2b
XM_043223536.1 mRNA downstream 127468 2735159 ~ 2748590 (-) True uhrf1
XM_043223047.1 mRNA downstream 142228 2690626 ~ 2733830 (-) True kdm4b
XM_043223049.1 mRNA downstream 142229 2690626 ~ 2733829 (-) False kdm4b
XM_043222235.1 mRNA downstream 406497 2297233 ~ 2469561 (-) True ptprsa
XM_043222699.1 mRNA upstream 1733 2880554 ~ 2887494 (-) True rad23ab
XM_043222701.1 mRNA upstream 9361 2888182 ~ 2891766 (-) True calr3a
XM_043223834.1 mRNA upstream 62183 2941004 ~ 2949697 (-) True LOC122328125
XM_043222642.1 mRNA upstream 72313 2951134 ~ 2953797 (-) True LOC122327343
XM_043222649.1 mRNA upstream 84410 2963231 ~ 2972360 (-) False LOC122327346
unassigned_transcript_2541 other downstream 744775 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 745100 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 745362 2130623 ~ 2130696 (-) True trnai-aau_114
unassigned_transcript_2537 other downstream 748123 2127862 ~ 2127935 (-) True trnai-aau_113
TU219884 other downstream 759875 2114338 ~ 2116183 (-) False LOC122328032
unassigned_transcript_2542 other upstream 743 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2543 other upstream 1513 2880334 ~ 2880405 (-) True trnad-guc_19
XR_006247638.1 other upstream 377188 3256009 ~ 3273051 (-) False cers5
XR_006247635.1 other upstream 468599 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 509439 3388260 ~ 3414711 (-) False G149102

Expression Profile