RNA id: XR_006247592.1


Basic Information

Item Value
RNA id XR_006247592.1
length 3047
lncRNA type inter_gene
GC content 0.45
exon number 12
gene id LOC122327072
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7900588 ~ 7952064 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatgggCCAGCACCCAGAAGAGGAGAACTTATAGGCTATAGCAATTAAATTTGTGTGAGAGGCGCTGTAGAGATGAGTGCTCTGGAAAGAGCAAGCGCTTTAATGAGAGCCCATGAAGATATATGGTCACGCAGGTCAGGAGTTATTGCAACCATCGTACGAGGGGCAAATAACTGTTTTACAGAGGAGCCATAAAGGTTTCTGAGGGATACATATATGCCTGGTTTAGACAAACTGTGATTTATGACGGTCTTGTTCAGCTAGAATTCCCCTCCAAATTCGTAGCGCTGAAATGCTTACTgcacagaaaaagagaaagggagGGCATGAGGGGgggaaatgaaaagaaaatgacaacaaaataaaatacatgtgtaAGTTGGAGGTGGAtgtatttaaagtcaacatCAAACTGCATTCACAACCTAGTTTACTTCAAAGCCTGAAAGCTCGCCAACACCTGCTTTTGAGGATGCTTTTTGACAAGGACGTCAAGGTCAGGTTCACCCTCGGCATATCCAGAGGTaacattatttgcttttatttatgcgATGCTTagtacattaacattaaatagcTTAAACTGCTCATTATTATCTGTAACAGCTACTAAAGTAGTGCCCAAATATGCATTTgactaatattacaaaatgtgaCCCAAGTGATGCAACAAACGCTATTCTTGTAATGCTGTAAAGACTTCAttattcatacttttattaGTTGCTGCATGCTGTTGTACCGTTACTtagattgttgttgttttttttcatcattgtgCTTTGTGCTTCtgcttagtatttttttgtgtgtgtgcttgcgcTAATTGTACAGTTTCGCTGTGTAACTGATTGCAATTTCGACTTCTGACTTTCTGCTTCAGTTTCACAGAGATAGAAAACTCGGATTTCAAACAACACGAAGGCTAGACTCATCCctttaatattgaatattgagaGGGGTCAGCACTGTTGCGTTAAAGCTTTCAAGAGTACAGGCGACAAGACGTGACTGACGGCATTCAGCAGCGAGgttCATTGTTATTCAGCCGCCATTCATCAGGCTCTTCTCCTGTAAATCTACAGTACACTAATTGCTCCCCTAAAGCAACCAGCAAGCAGGGGGAGGAAATGCACTGAAGGAGGGAGCGAGCGATAAAGAAATGACGACTAGCACTGCAGGTAGAAAAGGGGCAGAAGAAAAGCTGACATGATTCAGTAATTCGCTGAAGTGTGAATACGGCTCATTTGCCAGATCATCAGGTACAGAGGCCGACTGACGGACTGATTAAACACACAGAAGGCATGAACTAAAGAAGAACGAGggactgagagaaagagagggactAAAAGAGCGAAAGGACCAGACAGAGATAATGGGAAAAGAAGCAGATTACGgaaaagAATCGAGAGATGGCCATGTGGGATCTGCAGAACCTGAAGTGAAGTGAAATAAACGAGGTCCTGTGAGTCTTTCTCTACTTGAAGGCATGAGTGCTGTTTCCAAACACATGATGACATCAGACCTGCATCATGTGAGGTCATACCAAGTTGACCAAGATGGTCAACTAACTTTGGAACACTGTTTACCAGCTCAACCAGTCCCCTGCAAGGTCTACCAGCTGTAATCCAGTTGACCGAGGTGGCTTACCAGGTTGACCTCGACTCCATCAGCTCAATTTATCAACCAGTTTGGACATTCATGGATCGTGACTAGATGGATCAGAGCTAAGAATCACAACAGGACTTGGCTAATGACCATACAGCTTTGGAAGGGtatgaagTGGATGTTTGGAACCCAAGATGCACGAGGGCATTGGGCATGTGGACCATTCTGGACAAGGCAGATCCGAGCCACCAGCAAAGGGCCCACTGAAACAGTGTCAATCAACAGAGGGCCATGCCACCCTCCAGACGATGGCAATCCCGAGTGCCCCCTCCATGCCAAGCCACGTCGGCAACGGAAGCCGAGAACTGAGAGCTAAAGGCTTAGCTTTTCATCAAAGGCAAAATGCTTATCTCCCACCACAGAGACTTGAGCTGCGTCATTTCCAAACATCTGCCACTGACCGACTAATGCTGAGAAAACTGATTTCTGATGAGCTAAAATAGCGACACAGAAATTCAATGTAAAGAGTAAAATCGAACTACTTTCTCCTCCGGGAATGAAAGTGCCACTATTTACTTAGAGATTAACGTctgactggatgaagcgccaatCCCTTGCTGgagtatttttgaattttgcCCTTTCAAATCGTTCACATTCATCTTCGAAACGCAGCTTATCGCTGCATCTTCTGTCGGCGGGATTACGTTTTTATTTCTACATGCTTCTCAGTCCGAACAACAGCAAAATTTGCTCTCCCTGAAAATCGCTTCCAGAAATCTGTGACGAGATGGAAGGATAGACAGCGAGTGAGTCAGAGATACAGACAATGACTCAATGAGCACCAGAGAgctgatcatttatttataaatggcTTACGACTGTGACTGCAGTGGATTGCTGGTATAATAAGAGGCCTTGTGGACGTACGCAAGAGACTTGAGTGGCACACTGGGGAGAATGAGGATGTCTGTTATCAACTGCAAGAGAAGAAAGCGACTCAAGTGGGGGAAAAATTCAACTTCAAGCTAAAATAAGCAATGTCTCTTCGCCCCCTGCTGTCTGCTGCGCTGAGCCACGGACAAATAGAGGAGAAAAGCCTGTTTTTGGTGGACTGGGGATGAAAAGGGTCGAGAAATTTCAAGGGCTGCTGATGAAGAGCCTTCCACCTGTGATGAGGTTTTCTTGATGGACTGCATCTTGGCCTGAGGCTTGCTTTGAAGCAGCTGTCGCACAAACCAAGACAACAGACAAGGGTTCAAAAGGAAATGCATCACCAGTTTTTATGGCTCACGCTGAAAGAGCGAACGAGGCCGTCTGCCCGCCTCGCACTTCTTTAACCGGCATGCGCTTGCGGTGAATGGATTTGACGGTGATGGGGATGAAGACGCCCAAAGGATCCGGACCGAGGAGCAGCGTGTCATTCAGCCGTATTAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223036 lncRNA downstream 33686 7858323 ~ 7866902 (-) True G150706
XR_006247773.1 lncRNA downstream 248414 7647111 ~ 7652174 (-) True LOC122328071
XR_006247719.1 lncRNA downstream 271737 7624699 ~ 7628851 (-) True LOC122327778
TU222928 lncRNA downstream 402099 7486176 ~ 7498489 (-) True G150628
TU222925 lncRNA downstream 415654 7483864 ~ 7484934 (-) True G150626
TU223101 lncRNA upstream 118323 8065832 ~ 8066111 (-) True G150735
TU223180 lncRNA upstream 163306 8110815 ~ 8111228 (-) False G150786
TU223182 lncRNA upstream 163306 8110815 ~ 8259777 (-) True G150786
TU223188 lncRNA upstream 163839 8111348 ~ 8259777 (-) False G150786
TU223206 lncRNA upstream 181670 8129179 ~ 8233188 (-) True G150798
XM_043222495.1 mRNA downstream 10703 7661788 ~ 7889885 (-) True lrp1ba
XM_043222494.1 mRNA downstream 238857 7659333 ~ 7661731 (-) True si:dkeyp-122a9.2
XM_043223883.1 mRNA downstream 268887 7629947 ~ 7631701 (-) True LOC122328180
XM_043223375.1 mRNA downstream 278149 7619350 ~ 7622439 (-) True LOC122327777
XM_043223374.1 mRNA downstream 282226 7611390 ~ 7618362 (-) False LOC122327776
XM_043222227.1 mRNA upstream 22836 7970345 ~ 8065690 (-) False elfn2a
XM_043222226.1 mRNA upstream 22836 7970345 ~ 8065689 (-) False elfn2a
XM_043222225.1 mRNA upstream 22836 7970345 ~ 8065689 (-) True elfn2a
XM_043223540.1 mRNA upstream 135931 8083440 ~ 8096442 (-) True mfng
XM_043223885.1 mRNA upstream 212919 8160428 ~ 8166968 (-) True LOC122328182
XR_006247718.1 other downstream 282190 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 282190 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 845386 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 987030 6906000 ~ 6913558 (-) True G150492
TU222746 other downstream 1031042 6867843 ~ 6869546 (-) False mfsd6a
TU223633 other upstream 936612 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 1066039 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 1066039 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 1066041 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 1066041 9013550 ~ 9141867 (-) False nfia

Expression Profile