RNA id: XR_006247625.1


Basic Information

Item Value
RNA id XR_006247625.1
length 3837
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122327268
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11993123 ~ 11997045 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGAGGTTTGGCTGGTTAGCCTCGACAgttagcccctgctggtagatgtcGTAAGTGCACCGTCACGGGGGCGATAAGAAACCACCGACGCCATTCAGAACTAGCCGTTTATTCTGACAAAATAAATCGATAGCGTGCAGTCATATTGTGGTAAATGTTTTGCCACAGCCACCGACTgattttaaagtaactttttttttctccgtcaGCACTGCGATTCTGCAGGACCTTTTCATCAATGGAAATCCATTTTCTAGTCATTCAGTCTcgcatataaacatttttcttatcGGTATATGTTATGGCCGGGGCAGCCAGCCGCGCGTGGACGAATACGTTTCCTAATTGTCGTTTTGTATTCATTTCCAGTCTGGAGTTCAcctgtttagtttttattcggAGCGAGAAGCATCGAAGCCGAAATTCCACTGTTGTTGTACTCGAAAAAGGTTCGGGCCGTTGCACGCAGTTGGCATATTGGaacaaAGAAACACTAATTAAATGGTTCAAAATGAGGACTCAATAGCAACGTGACAACTGACAACTAGTCCCCGCTGCCACCGAGACGAAATTAGATGAGTTCTCCCCATCCATTGTCTATCAGCCTGCaccacatttcacattttctaaAGTGTCTAATTTCACCTTTTTCTAATTATCCAATCCGGGGGGAAATACGCTAAAAGCTGACTTGTCCTGCGTCAGCACTGGCTGCAGACTGTTGTGAATACCACGTAAGGTATCACTATGGTTTCAGAGCCACGGTGAGGACTGAATAATTAATAGAAGCCTTCTCATTGACAGAAGTACTTCGGGAGCCATTAGCTCAGGTACCTGACCAGCGCGGGCATATTAGTGAGAAAGAAGTGATTCTGGAGAGATTGATTTCCCCACAAACTGACTGATCAGAAGTCTGTGCGTTAAAGGAACAGCTTAGcccaaatgtatttattttttttaatcctcaggccatccaaaatgtagatgtGACTGTTTTCGCGTTGGCGCAGGTTTGGAGAAATACATCCTCTGCCATCtcagtgaaagtccaaacagctgataaaagaaCAATAACCCATAACCAGttcatcaattaacatcttgtcaattaaaaaaaaaaatctataatccAAATAAAATTGCTTGCTccgttaaaaaaaactgaatcaggagagaaatatacgtgaaaacaaatatgttggtcGATTCTGATGTGAGAGGAGAACggggatggattttttttttcaccggagaaagcattattatggattatggacttgtattttagccagaagcaatggttACAATTAAAACTCCTTAATGTGGATTTGTATACAAACACATGGCTTTCTGCTTAACAAGGCCCACAATAGgcttttatgttaaaaacttAGTGAACCTTTGAGTAACTTGGCATGCCTTGGCACATTGTTCTACTTCACATGTGTTGTCGAGAGACGCTAAACCTAATGAGCTGCCTCGCTGCCTACATAAGCAGCTACTTTTTAAGGCAGCATCCTAACCGAAAGGAAAATTGACTTTCTTAATGGATGTTCTGAGCGTAATTGTGAACGATTAACTGTTGCGTGTGTTTGCGATGcgtaatcaaaatataataaccCGCTCGTCGCGCGACTAGCGATCTGCGCGGGAGACTTGACTTATTTATCGTCATTAAACCGCATCTATATTTGCACATTGCGCTCGTTCAATGCCAAGCGGTTGGCATTCGAGGTTGTTTTCCATGTGCGTTCCCTGGATTCGAACCCGTGACCTTGGTATATCTGGAGCCATGCTAAGTTAATCTACTGTTCTAAAATAAACCTACTTCAAAAGGCCTTTAGAAATAAAAGCTTTCAGAGGGTTCAACGGACGGGCACATCAATTCTAAGCATGTAAAACTGAATAGGgcgcttttaaatgaaatgcgcCAATTGTTGATTCCAATAGAGTTTGATTTTAACATGTTGATAAGCTACTTCTGTAGTGAATAAAATCGGTGATTTGCAGAGCGCCATAGAACAAAATGCACAATGGCATTTAATGAAACTggaatgaaacaaataaatcaggTTATCGACTGAATAACGCATCGCATTTCTAAGAGATGTACAGAACCATTAAAAACACTCTTAACAGAATACTGGATGTCAGCAAAGGTTTACACAAGTGTAAAAAAACGTACATTCCTGATAATGGTTAACTTTACCAGGAAATGATCTTTGCAGTCACTTCAATCATGTTCAAATTAGTCTCAATTTTTCCGCTTGCACATGTTAATAAATGACTTCAAGTCAGAGTCAGAATCTCCAATCGAGCCCCTAACAGCCTATGCACTTTGATACAATATTCCAGTTTATATCCGCTACTTAGAAAACCCATATATACAAAATTGAAACATCTAACCTGTGTAAATTAGTATCAAAGatgaataatttttaatgcactgtggggaaaaaaaaaaaagatagaacgttcactcaaaatgtttttttgaatcccactgtgctgtttttcttttgatttcttATGGAAACGTGGGCTGGATGGATGTGCTTGATCATTGCTTTCGTAACTCTTGTAGCGTCTCACACAACACAGTGTAACAAAAATGTgacatcatattaaaatatgttttataaacttTTATCATTTCTAGACCTTGCATCATTCCTCATTGATGGACGCTGCTGTGGTTTagatcaaaaatgcataaataaatcagcACATACCAAACGATCTGTAAGAAGGGACAAAGCGATAGTGACTAACAAAACAGTTACATTTGTTTTGCGACGTGACCGTCTTATTGGATCTAATAATAAAGTCTACGATTAAAGCCTTTGTGAAAATTGACTTGTGCCTTGTTCATAAACAAGTCCACTGTAAAATGGAGTGAACGAAAGACCTAGTTCTTACTGGCGTGGTCTGgttcttcattaaaaaaagtaaattcgCTCTTTCCTAAAGCAATGCAAACACAGCTATTCCACAACTTGGTTCTGCATAGCGTGTTGTTGTCTTCTGAGCCATCTTTATCATTTGATTTTTGTGTAGACCTGTGTACACCTCTCTCGTAAACACTACATGCGTTAATCGGTGGGCGGAGCTCAACAGGCAGCGCTGTAGAAGCAGGCGTTGATCTTCTTCTGTGGAGACGGTGCCTGTCCACTCTATTACATTATAGAGTAGAACATTCCAAAAGCTGTTGTTTTGGAGCTTCAAAACGAGCTGTTTTCAGACTAACAACTAAGGTCTCAATACTGAAacttgcaggatgtttttatagcGCAATATATGTCTTAtatgtcaaaagatcaaggGGATTTTGGTTTCTCAGTTCGAGGCTCCTTTAAAGGAAGTCCaccaaaattgaaaatgaatctgaacagatctggagaaatgcagcattatatcacttgctcCAGTCTATCGATAAACAtattgtgaagtgaaaaaaaaaatgcatttgtaagaaacaaacccaccattaagatgtttttcaaCTATGAACCTTTGTTTCCAGCTAAAACTTGAATCTTCTATTCATGATCCTCTATTCATGCTTTCTCCATctatatcttggatggcctTAGGGTGAGTACATGCtcagcactttttatttttgggcgaactatcaAATCGGGTTAAAAAAGTTTCCctgagtaattttttttctcaatgcagaaagacagagaagaagAATGCAATCGAATAACACCAGATTTTATCAGTCATGAATTGcgctacttttaaaagtaacctCTCAAGCTATATTGACTCCGCTTTAAAAAAACGTCCACAAAGAATAaccactgaataaaatgttaagctAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225279 lncRNA downstream 90 11992713 ~ 11993033 (-) True G152223
TU224862 lncRNA downstream 147981 11841588 ~ 11845142 (-) False LOC122327182
TU224864 lncRNA downstream 147981 11841588 ~ 11845142 (-) True LOC122327182
TU224850 lncRNA downstream 198899 11793596 ~ 11794224 (-) False LOC122327290
TU224804 lncRNA downstream 403200 11587661 ~ 11589923 (-) True G151919
TU225291 lncRNA upstream 29067 12026112 ~ 12026795 (-) False G152234
TU225292 lncRNA upstream 29067 12026112 ~ 12026795 (-) True G152234
XR_006247624.1 lncRNA upstream 79696 12076741 ~ 12080117 (-) True LOC122327264
TU225356 lncRNA upstream 81098 12078143 ~ 12079967 (-) False LOC122327264
XR_006247618.1 lncRNA upstream 86462 12083507 ~ 12086914 (-) True LOC122327175
XM_043223479.1 mRNA downstream 122838 11862795 ~ 11870285 (-) False LOC122327835
XM_043223478.1 mRNA downstream 122839 11862795 ~ 11870284 (-) True LOC122327835
XM_043223480.1 mRNA downstream 122844 11862795 ~ 11870279 (-) False LOC122327835
XM_043223482.1 mRNA downstream 122848 11862795 ~ 11870275 (-) False LOC122327835
XM_043223483.1 mRNA downstream 137446 11845866 ~ 11855677 (-) True LOC122327836
XM_043222317.1 mRNA upstream 33417 12030462 ~ 12032362 (-) True rgs2
XM_043223915.1 mRNA upstream 43231 12040276 ~ 12043067 (-) False si:ch211-117l17.5
XM_043223914.1 mRNA upstream 43231 12040276 ~ 12043065 (-) True si:ch211-117l17.5
XM_043222479.1 mRNA upstream 50812 12047857 ~ 12049538 (-) False si:ch211-117l17.6
XM_043222478.1 mRNA upstream 50812 12047857 ~ 12049534 (-) False si:ch211-117l17.6
unassigned_transcript_2544 other downstream 644672 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 804445 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 804445 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 1570788 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1671460 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 48424 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 145797 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 563828 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 909104 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 909202 12906247 ~ 12914226 (-) False cxcl12b

Expression Profile