Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_006247711.1 |
| length | 366 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC122327758 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056720.1 |
| NCBI id | CM032089.1 |
| chromosome length | 18002998 |
| location | 11128906 ~ 11140378 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0044085 | cellular component biogenesis | biological_process |
| GO:0042692 | muscle cell differentiation | biological_process |
| GO:0031497 | chromatin assembly | biological_process |
| GO:0048468 | cell development | biological_process |
| GO:0006323 | DNA packaging | biological_process |
| GO:0006325 | chromatin organization | biological_process |
| GO:0022607 | cellular component assembly | biological_process |
| GO:0006333 | chromatin assembly or disassembly | biological_process |
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0071824 | protein-DNA complex subunit organization | biological_process |
| GO:0065004 | protein-DNA complex assembly | biological_process |
| GO:0034728 | nucleosome organization | biological_process |
| GO:0071840 | cellular component organization or biogenesis | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0010927 | cellular component assembly involved in morphogenesis | biological_process |
| GO:0055001 | muscle cell development | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0014866 | skeletal myofibril assembly | biological_process |
| GO:0031032 | actomyosin structure organization | biological_process |
| GO:0071103 | DNA conformation change | biological_process |
| GO:0006996 | organelle organization | biological_process |
| GO:0007010 | cytoskeleton organization | biological_process |
| GO:0009653 | anatomical structure morphogenesis | biological_process |
| GO:0097435 | supramolecular fiber organization | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0048869 | cellular developmental process | biological_process |
| GO:0032989 | cellular component morphogenesis | biological_process |
| GO:0070925 | organelle assembly | biological_process |
| GO:0048646 | anatomical structure formation involved in morphogenesis | biological_process |
| GO:0030029 | actin filament-based process | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0016043 | cellular component organization | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU224524 | lncRNA | upstream | 51837 | 11075896 ~ 11077069 (+) | True | G151738 |
| TU224470 | lncRNA | upstream | 133962 | 10935035 ~ 10994944 (+) | False | peak3 |
| TU224469 | lncRNA | upstream | 135878 | 10935035 ~ 10993028 (+) | False | peak3 |
| TU224471 | lncRNA | upstream | 135878 | 10973022 ~ 10993028 (+) | False | peak3 |
| TU224464 | lncRNA | upstream | 195911 | 10932663 ~ 10932995 (+) | True | G151703 |
| TU224539 | lncRNA | downstream | 42463 | 11182841 ~ 11183080 (+) | True | G151750 |
| TU224634 | lncRNA | downstream | 156530 | 11296908 ~ 11297153 (+) | True | G151815 |
| TU224632 | lncRNA | downstream | 193791 | 11334169 ~ 11384582 (+) | True | G151813 |
| TU224630 | lncRNA | downstream | 225715 | 11366093 ~ 11384582 (+) | False | G151813 |
| TU224646 | lncRNA | downstream | 247254 | 11387632 ~ 11388850 (+) | True | G151820 |
| XM_043223277.1 | mRNA | upstream | 136802 | 10987836 ~ 10992104 (+) | True | peak3 |
| XM_043223326.1 | mRNA | upstream | 197955 | 10923748 ~ 10930951 (+) | True | nfil3-4 |
| XM_043223333.1 | mRNA | upstream | 206875 | 10918089 ~ 10922031 (+) | False | si:dkey-172o19.2 |
| XM_043223334.1 | mRNA | upstream | 206875 | 10918573 ~ 10922031 (+) | True | si:dkey-172o19.2 |
| XM_043223288.1 | mRNA | upstream | 238714 | 10874428 ~ 10890192 (+) | True | onecut3a |
| XM_043223286.1 | mRNA | downstream | 36130 | 11176508 ~ 11185087 (+) | True | crlf1b |
| XM_043223287.1 | mRNA | downstream | 36132 | 11176510 ~ 11185087 (+) | False | crlf1b |
| XM_043223230.1 | mRNA | downstream | 49474 | 11189852 ~ 11225519 (+) | True | cpamd8 |
| XM_043223327.1 | mRNA | downstream | 85782 | 11226160 ~ 11229779 (+) | True | odf3l2b |
| XM_043223260.1 | mRNA | downstream | 92357 | 11232735 ~ 11249556 (+) | True | shc2 |
| TU224458 | other | upstream | 206978 | 10919060 ~ 10921928 (+) | False | si:dkey-172o19.2 |
| TU224353 | other | upstream | 291541 | 10806052 ~ 10837365 (+) | True | G151620 |
| TU224351 | other | upstream | 291541 | 10816135 ~ 10837365 (+) | False | G151620 |
| XR_006247780.1 | other | upstream | 419796 | 10709044 ~ 10709110 (+) | True | LOC122328232 |
| XR_006247720.1 | other | upstream | 1135465 | 9970622 ~ 9993441 (+) | False | gatad2ab |
| XR_006247707.1 | other | downstream | 178311 | 11318689 ~ 11323940 (+) | False | mier2 |
| TU224828 | other | downstream | 682556 | 11822934 ~ 11824055 (+) | False | LOC122327289 |
| TU224831 | other | downstream | 686966 | 11827344 ~ 11833374 (+) | False | LOC122327134 |
| TU224905 | other | downstream | 870091 | 12010469 ~ 12268139 (+) | True | LOC122327127 |
| TU224911 | other | downstream | 908040 | 12048418 ~ 12263031 (+) | False | LOC122327127 |
