RNA id: XR_006247727.1


Basic Information

Item Value
RNA id XR_006247727.1
length 2100
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122327846
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7171342 ~ 7174445 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTATTGCTGTTCTTACTCCATCGTTattggttttttttcattgtccaGGAGAAAATTCCCAGTTGAATACCAGCTGAGATCTTCGTCTTGCCCATCCTACCTTTTTAGATGTCATATCTGGAGGGCGTCCCCGTCTTTTCCTTGTGTGCCAAATCGATTGCAGGTAAACTAATCTACTTTTTGAAGCCACCTGAATAAAGAAGCCCTCCAGACGAAAGCTTTTACGGTACATGCCAAGTGGAcagggaattgtgggattgCAGTCAATGGGGCCTGTCACGGTTTCCATGGTTGCTGTCTCCAGGGAGACACAAGATGAGAGAAGCATCAGTGCTGATATGGGTTCAGATGGCATGTGAATGGATATTGGCTCTATAAAGTCCTTAAAAACATTACCGCAATATGAAtgtggtggggtttttttatggGTTTATAAGAAATCCGCAGCACTATCCGTCTCTTAAAGGTTCAAGAGTTTCATgtgaatttagttttaaagatTGTATTCACTGATAATGgttcagtgattcagtgagATGTCAACTCTAGACCCTGTCAGACCAATTCAGTCAGATTTGTGAATTGTTCAATATGGTTTGTAAATGTATCAGTCAGTCAATTTCATGAACAAATTGTTCAGTCATTTGATAAACAGATCTCTTTGATTTGTGAGTGAATCAATCATTCTCACAAGTTCTATCAGTCATTCTGGGCTCATTCAGTGAATTATTCTATAATTTCAAGCTCAAGGTAGTTGATAGCAAAGGATTTGAAGGCCACGTTGATCAGGGCTACCGTGTTCTAAAAACCTGCTGTAAGCTACTTTGACTTTGTCATTGGACCAATGTCGATAAATTCGCCAATTTTCTGCTGAAAAGGACAAGACAGAGAAAGCCTTAGGGAATTTAACATTTACACCACTGTCATGAACTCAGAAAGACACAGCCCAAGGTAGGATTATGAACATAGCAAAGAGGTTCACACATTCTCTGAAAGAGCACCAGCGGCATTAGACAACATGAGCATTCACTTTAGCACGATCCTCAAAAAAAAAGGAGTGAAAACACAGGTGTGGGTTGAGATTTCCTCTCCTGTTGGCACTTTCTTCTCACTTAACGTGAAAGCCGCGCATACACATTTTATCCTGACTGAAAGGAAGATAGGACAGGGACAGGAAGTAGATACAGAGTCGCAATTTTTCTCTCGTCATACAGGCAGAAAATAATCGGCATGGAGCGATCTGGTCAACACGACCATACTCCCGCAGGAACAATAATAGCCTAGGAGTGCAGAAATAACCTAAAGTGCGCTGTACAGTGGGAACTCACACATGCTTCTACAGCAAACTGACACAAGTGTGTGCGCTacagtatctctctctctctgatacacacacacacacacacacacacactctgtgcgTGTCAGATTAAGTGGGAGTGTCGGTTTATCGTGGGTTCTCAGGGAGTCACAGGCTCTGAGCTGGAGGACTCACACAATGTGTCTTGCAGGCCTGATAGCAGCGTCCTCGGCGCTACGTGCTCCAGTTGACCAAGAGTCCAAGAGTCTGAGACCACTGAAgtatatacttaaatatttctgtttacttcaatacatttgttttattttgtatatgctGTATGGGGCTCAAACAAatccagtcattttttttttttaaattgagatttatacaccatctgaaagcagaataaatagttttttcattgatgtattgtttgttaggaAAGGACAGTATTTGGCAAAAACAATCTGAAGATGCaataaaaatctacattttgagaaaatcacctaTTAAAGATCTCCAGAGGAAGtccttagcgatgcatattactaatcagaactgttttgaaatatttatgatagGAAATAGACCTAATATCCAAAAGATTTGtgatttataaaagaaatatcaatcattttgacacaTACAATGTAcagctattgctacaaatacacccgTGCTTGGTTTTGGCCCTTGACCTTCATTAGATATCTATGCAAGTCATTATGGTATCACAATTTGTCTAATATTTATGtctataaaatgtcttttgtaaCACATCTTTTCATTGAACAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222806 lncRNA downstream 148645 7022401 ~ 7022697 (-) True G150542
TU222805 lncRNA downstream 149659 7020763 ~ 7021683 (-) False LOC122327113
TU222802 lncRNA downstream 165895 7005056 ~ 7005447 (-) True G150538
TU222764 lncRNA downstream 167224 7002960 ~ 7004118 (-) True G150503
TU222754 lncRNA downstream 230716 6939618 ~ 6940626 (-) True G150494
TU222848 lncRNA upstream 21908 7196353 ~ 7196683 (-) True G150564
TU222856 lncRNA upstream 56245 7230690 ~ 7231488 (-) True G150571
XR_006247596.1 lncRNA upstream 116227 7290672 ~ 7296555 (-) True LOC122327085
TU222888 lncRNA upstream 234968 7409413 ~ 7423399 (-) True G150596
TU222918 lncRNA upstream 275803 7450248 ~ 7469574 (-) True LOC122327668
XM_043223523.1 mRNA downstream 64702 7058157 ~ 7106640 (-) True ahr2
XM_043222295.1 mRNA downstream 115780 7020754 ~ 7055562 (-) True LOC122327113
XM_043222301.1 mRNA downstream 168795 6997908 ~ 7002547 (-) True LOC122327118
XM_043222297.1 mRNA downstream 176708 6986565 ~ 6994634 (-) True LOC122327115
XM_043222299.1 mRNA downstream 199382 6962514 ~ 6971960 (-) False LOC122327116
XM_043223787.1 mRNA upstream 60456 7234901 ~ 7283785 (-) False cntnap5b
XM_043223788.1 mRNA upstream 60456 7234901 ~ 7283774 (-) False cntnap5b
XM_043223786.1 mRNA upstream 60456 7234901 ~ 7283774 (-) True cntnap5b
XM_043222264.1 mRNA upstream 212612 7387057 ~ 7389184 (-) True s100b
XM_043222263.1 mRNA upstream 212612 7387057 ~ 7389119 (-) False s100b
TU222808 other downstream 116140 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 257784 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 281685 6854770 ~ 6889657 (-) False nab1a
TU222740 other downstream 289873 6854770 ~ 6881469 (-) False nab1a
TU222746 other downstream 301796 6867843 ~ 6869546 (-) False mfsd6a
XR_006247718.1 other upstream 435411 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 435411 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1709676 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 1839103 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 1839103 9013548 ~ 9171929 (-) False nfia

Expression Profile