RNA id: XR_006247752.1


Basic Information

Item Value
RNA id XR_006247752.1
length 734
lncRNA type intronic
GC content 0.42
exon number 4
gene id LOC122328037
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1587528 ~ 1596179 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGCAGTACGAGAACAAACACATGAGGTCCCGGAGCAGACAGAGACACGCACTCTCTCACTCGCTGTGTGATCAGATGTTGTGGGAGATCGGTCTGGAGCAGTTTTAACTGAAAGTATACATATTCTAAGTAAGGAAAGAGCAATCAAGGTCATGCAGCAGAACTGCAGCCGATGATCTGGTGGTGAAGAaggagattcagtcactctatACACTAACATCCCTGACGTCAAGCATGGGTTTTTGCGAATTCAATGGTCTGGTAAAGCTGTAATCGCTGAAATCACTGATAGGGCCAACAACTTCACTGTGTATGATGATGTTCTTGATGGGATATTCAGAAACAGAGTAGAGCTGGACaatcaaactggatctctgaccatcaccaACACCAGACCTGAAGATGCTGGACTTTATGTATTATTCATGGAAAAAGATGATGAAATGATGTCCTGTCTGTTGAACTATTTCATTCTCACTGTGTATGAAGAAATATCAGCGacggagggagattcagtcactctccACTTTAATCAGACTGAAATCAGAGACAacttaaagatatttttgaagtcTGAAACAGAAAATGCGTTCACGTTTGTGAAGTGTGGTCTGTTTGAGAGATTCAGAGAAAGAGTGGAGCTGGACAATCacactggatctctgaccatcaccaACACCAGACCTGAAGATGCTGGACTTTATAAACTGGACTTTAAGACATCAAAAGCATT

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219722 lncRNA downstream 23562 1562575 ~ 1563966 (-) False G148594
TU219723 lncRNA downstream 23562 1562575 ~ 1563966 (-) True G148594
TU219699 lncRNA downstream 73146 1512012 ~ 1514382 (-) True G148581
TU219700 lncRNA downstream 73146 1512012 ~ 1514382 (-) False G148581
XR_006247756.1 lncRNA downstream 89937 1493235 ~ 1497591 (-) True LOC122328042
TU219734 lncRNA upstream 28858 1625037 ~ 1880885 (-) True G148600
TU219749 lncRNA upstream 42660 1638839 ~ 1685959 (-) True G148611
TU219759 lncRNA upstream 120736 1716915 ~ 1785423 (-) True G148619
TU219760 lncRNA upstream 120736 1716915 ~ 1727844 (-) False G148619
TU219621 lncRNA upstream 121478 1717657 ~ 1723896 (-) True LOC122328045
XM_043223719.1 mRNA downstream 2984 1583015 ~ 1584544 (-) True LOC122327997
XM_043223717.1 mRNA downstream 5111 1580290 ~ 1582417 (-) True LOC122327995
XM_043223607.1 mRNA downstream 12618 1570476 ~ 1574910 (-) False LOC122327919
XM_043223709.1 mRNA downstream 160226 1423876 ~ 1427302 (-) True LOC122327988
XM_043223828.1 mRNA downstream 435135 1141558 ~ 1152393 (-) True LOC122328117
XM_043223582.1 mRNA upstream 103719 1699898 ~ 1798685 (-) False LOC122327910
XM_043223586.1 mRNA upstream 103719 1699898 ~ 1798685 (-) False LOC122327910
XM_043223589.1 mRNA upstream 103719 1699898 ~ 1798685 (-) False LOC122327910
XM_043223584.1 mRNA upstream 103719 1699898 ~ 1798685 (-) False LOC122327910
XM_043223588.1 mRNA upstream 103719 1699898 ~ 1798685 (-) False LOC122327910
TU219681 other downstream 124352 1461873 ~ 1463176 (-) True G148573
unassigned_transcript_2536 other downstream 154013 1433445 ~ 1433515 (-) True trnag-gcc_102
unassigned_transcript_2535 other downstream 154598 1432857 ~ 1432930 (-) True trnai-aau_112
TU218822 other downstream 754153 831975 ~ 833375 (-) False arl8a
TU218901 other downstream 799375 783863 ~ 788153 (-) False srsf3b
TU219689 other upstream 47531 1643710 ~ 1654340 (-) True G148574
TU219752 other upstream 65006 1661185 ~ 1664627 (-) True G148613
TU219884 other upstream 518159 2114338 ~ 2116183 (-) False LOC122328032
unassigned_transcript_2537 other upstream 531683 2127862 ~ 2127935 (-) True trnai-aau_113
unassigned_transcript_2539 other upstream 534444 2130623 ~ 2130696 (-) True trnai-aau_114

Expression Profile