RNA id: XR_006247756.1


Basic Information

Item Value
RNA id XR_006247756.1
length 4091
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC122328042
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1493235 ~ 1497591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgaacccCGGAGGGcgcgtttatttaacaatatataggtgataggtgaatggtgagccggtgcacaaccgctgtcagtggcgttatcttctgggtgctcggtgctctgggtgcagtcggtgagtaCGGCAACGGTGATTCTTGggggaattagctccgtgtcgcggttcaaggactggcttctagaagatacaaaagagataacagtcagagacagcatgtaggagtgtcgtagctcactggagtgcgagcctgacgtggcttatctggccaccggcaaacgagctccaggtgcggcgagtccggtgattagtggctttcccaggtgatggtggtttattcccagggcaacgctgatggtagctcgGGACGCCCGTCACAATATATTACTGTTCAACTAAAAACTCGAATTATAGTTTTTcattacaatcagtgtttgatAACCTTTAAATTTTTTGTGGTTCAGTGCACATTGAATTGAACTTTTCTTCGTCTTGTCTGCAGATGAAAGCTGTCAGTATGTGACTGGAATTGTGGGTAAAAACCTGTTACTCCTGAAAGAGCTGAATCTGAGTGGACATAAACTAGAAGACACACGAGTGAATCAGATCTCTGCTCTACTGCAGGATAAACACTTGTATCATAGATATATATGGGTAGATTTCACACTGTAGATGTGTTGCTATTACATCCATTAATATTCCAGGGAAAGCGGTTAATTATTGCTTCAACAATTCTATACTCAAAATTGCATAACGTTTTTAAGAAGTATACAGAATTTAACATCCACAGCCTCTTCAAACTTCTGCTGTCTGGAGATggtgctggaaaaaaaaaaaggacagaaagaCTCACAACACAAAGACTCACAAAACACAAGTAAATGCACTCTGCACTTTCCATGAGTTTCCTTGTATCTGTTTTTCATGAAGACAAACAGCTCTTGAAAACACTgtcacaagacaaaaacataatgaaaagtaatataaaaaaacaagaaacataaTATAacgtaaaatatataatttacatgaaTAATCAATTAACAAATCAATAAGTATATAAATGGCTTTAAAgataattattatgattaaatggaatattaaaaatgattaaatactaaatgattaaattgaaataaaaataataaatgaagaagACACATGCTGCATTTTAGGTGTAATGAGGAGTCATTCTTATATAGTAGTCTAATGGGGTACACCTGGGCAAGTAATCAGGGCTGGGAaatggcatgatgggaaattGAGTTCTGAGGACTAATATTCTGGGGAGTGTTCCCTCCGGTGGCCaccggagagagccacagaggcgcgGTTCATGACATTAGGATCCTCAGATTCTTCAATATCATCTCTCTGTCATCAAACAACCAGATGAATGAATCTCTAACACAACTGAACAGAACAGAACTAGACTGGGCTTATTTCAGTGCAGGCACTGGTTCTTCAGCTTTACCTGTTTCATAGAAATATTATTGTACTTAACATCTACAGAAAAAGATACAGTTTTACTTGGATCAGCAAAGTTGAATCTGTGTAGTAAAGCTGATCAAGATACTGAGCAGAGCAAAGAGATGCACATAAACCACAGAAGTACATTAAATATGACACATGTTCATGGTTTGATTAAATGATcaactcatttttttttgttttgttttaaagaccAAATTGTGaaaaactttgtttttacaCAGACATTATGAtgttattaaatagttttttatcttctctctttctctgaattCAGGTTGGTTTGACAGATGAAGGTTGTTCTGCTGTGACTTCAAACAGCTGCTCTGAAATCAAACCATCTGAGAGAATTAGAGAGTTGGAATAAACTCGGAGACTCTGGAGGAAACAACTCAGTGATCTACTGATGAACActgtttaataattaacaaagttTAGTGTCCCGCTGTTCTTGTAGAATACCTCTAAACGGATTCTAAATCTCATAGGGTGTAATGGCCGGGGAGCAAAAAGACACACAGAGATGTATATTTCCTTACTCCGGTTTATTCCTGAATACCTCAGTGatctactgatgaacacacaattcAAGCTGAATATTACAGAGAAACAGTGTCTCATCCTGACTTCAGCAATGAAAGCAAAACCACCACACCTGAAAGAAATGAAACTGAGCTGGAATCAAAAGAAGAACATAGGAGTGGATCACTTATATGACAGACTGAAGTATTCACACTGTAAACCGGAGAGATTAAGTGTAGGTTAAGCAGCTGTGGTTTGACAGATAAAGGTTGTTCTgctgtgtcttcagctctgaattCAAACCCATCACACCTTAGCGAATCAAACCATCACATGTGTCACGCTCCGGTCAAGGAAGTAAACAGAATCACTGTAATGGAAAAGGGGTTCtttaatgaacaacaaaaaggtgGCGTACAGCCTCAAACTTTAACAAAAGAACACAGGAACATCCAAGTTCTTTCCTTTATCTGGATACCACTCTCCAGGGGAATTCCAAAGGGAAGAGCAGACAGGTTGACGGGAAGACGGCCGGAGTACTAGGTTGGTAACCTCAAGGATCGCCGTTGTGGAAGGGGTGAGTGTGGTTTATGAAGGGTGGTTGTTGCAGGTGTTGCTGATTAGTACTCGGGTGATTGGGATCGTGTCCATGTGGTGAGTCCGGTGGAAGGTGGAAGTGATGACGTGACAACATGAATGGAATTGGACCTGAGTTGGAATAAACTCTGAGAATCTGGAGTAAAACACCTCAGTGATCTACTGatgaaaactgttaaataattaacaaagttTAGGGTCCTGCTGTTCTTGTAGAATACCTCTAGACGGATTCTAAATCTTATAGGGTGTAATGGCCGGGGGGcaagaagacacacagagatgTATATTTTCTTACTCCGGTTTATTTCAGAATACAATGATGTATATAAGCATTTTCAGGGGGGAGTTTTACCCCTCTAGCCAGtgaaacaaaagatgacatatGTTGTATCCATGTCAAAAGATATTTACTTATATAAGATAAAggaaattatgaacatatatagAGTACTTTTggacaaagaaaaacacttcttaGTATTGAAAGTGTAGAGCAAACTCATTCACCCCACGACTCAGAGTAGCGCACACACCAATGACCAACTGAACCCTTCTAACATGTAAAAGGATGGACAGATCACACATACTACAGAACACTAAGgggatataaaaagaaaatcacgtcTAGGAGTAGAGAAAtctaacaaacacacaattcTAGCTGAAGAAACTagaattagtattattattagtttattaaggAAATCAATATCAGCAATATTTCAATGCTTATTTAGATTAATTGGGTACAtaatttatttccaaaaattAATGGACCCTTGTGATGTTTCATGAAAATACTTGTCCCTTTCTGGACAAGTCAGAAACtttcacacataaaaataaagtgttatttcaattaaaatgaatgaagtgtgacgtctctctttctctcagtgtAGGTTAAGCAGCTGTGGTTTGACAGATGAAGGTTGTTCTGCTGTGccttcagctctgaaatcaaacccatcacatCTAAGAGAATTGGACCTGAGTTGGAATAAACTCAGAGATTCTGGAGTGAAACAACTCAGTGatctactgatgaacacacatttcaaaatgaagaaaCTAAAATTAGTatcattattagtttattatggAAATCAATATCAGCAACATTTCAATGCTTAATATCATTGATGTAAAAGTGTCCAcaatttatttccaaaaatgaATAGACTCTTGTAATGTTTCATGAAAATACTTGTCCCTGTCTGATTCATtgtcttttctctttatttattcactttctATAAATGTGGTATTAGAGAGAAACAGTGTCTTATCCTGACATCAGCTATGAAAACAAACCCACCAcacctgaaagaaaagaaactgagTTGGAATCAGATGAAGATTGTTCTGctgtcactagcaatcttcaaaaacaaactcaaaactcatctttttcgtttacacttgacccaacatagatagcactttcttcttcttctcctgctctttcctatccttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219617 lncRNA downstream 15360 1262376 ~ 1477875 (-) False G148533
XR_006247764.1 lncRNA downstream 32350 1458838 ~ 1460885 (-) True LOC122328049
TU219453 lncRNA downstream 45875 1445261 ~ 1447360 (-) True LOC122328029
XR_006247740.1 lncRNA downstream 45899 1446520 ~ 1447336 (-) False LOC122328029
TU219671 lncRNA downstream 57796 1434715 ~ 1435439 (-) True G148569
TU219699 lncRNA upstream 14421 1512012 ~ 1514382 (-) True G148581
TU219700 lncRNA upstream 14421 1512012 ~ 1514382 (-) False G148581
TU219722 lncRNA upstream 64984 1562575 ~ 1563966 (-) False G148594
TU219723 lncRNA upstream 64984 1562575 ~ 1563966 (-) True G148594
TU219731 lncRNA upstream 82767 1580358 ~ 1625907 (-) False LOC122327995
XM_043223709.1 mRNA downstream 65933 1423876 ~ 1427302 (-) True LOC122327988
XM_043223828.1 mRNA downstream 340842 1141558 ~ 1152393 (-) True LOC122328117
XM_043223824.1 mRNA downstream 444998 1038827 ~ 1048237 (-) True LOC122328113
XM_043223599.1 mRNA downstream 462791 1022748 ~ 1030444 (-) True LOC122327917
XM_043223605.1 mRNA upstream 72885 1570476 ~ 1865956 (-) True LOC122327919
XM_043223606.1 mRNA upstream 72885 1570476 ~ 1610253 (-) False LOC122327919
XM_043223607.1 mRNA upstream 72885 1570476 ~ 1574910 (-) False LOC122327919
XM_043223717.1 mRNA upstream 82699 1580290 ~ 1582417 (-) True LOC122327995
XM_043223719.1 mRNA upstream 85424 1583015 ~ 1584544 (-) True LOC122327997
TU219681 other downstream 30059 1461873 ~ 1463176 (-) True G148573
unassigned_transcript_2536 other downstream 59720 1433445 ~ 1433515 (-) True trnag-gcc_102
unassigned_transcript_2535 other downstream 60305 1432857 ~ 1432930 (-) True trnai-aau_112
TU218822 other downstream 659860 831975 ~ 833375 (-) False arl8a
TU218900 other downstream 705082 783863 ~ 788153 (-) True srsf3b
TU219728 other upstream 86153 1583744 ~ 1614538 (-) False LOC122327997
TU219689 other upstream 146119 1643710 ~ 1654340 (-) True G148574
TU219752 other upstream 163594 1661185 ~ 1664627 (-) True G148613
TU219884 other upstream 616747 2114338 ~ 2116183 (-) False LOC122328032
unassigned_transcript_2537 other upstream 630271 2127862 ~ 2127935 (-) True trnai-aau_113

Expression Profile