RNA id: XR_006247761.1


Basic Information

Item Value
RNA id XR_006247761.1
length 539
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id LOC122328046
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 972557 ~ 973444 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCGGCCCGATCAGCGGGGACGGTTCATGTTTACCGGGACTCGCTCCGCCGCATCACACCGGAGCCCCGATGGCGCGAGCGCTCCGGCCCCGCTCCGGTGTGACGTCAGAGCGGCTCGTCTCATTTAACCCTctgCAGCGCAAGCGCCGTTCATGTTCAGCTGAGACTTGTCGGTCACTTCCGGTCACTGCCAGGAGATGGCGCTGCTCGCCGTGTGACCCATGATCTTCAGGAGACGTGAAGACACACGTGAGACGTCTTGATTTAACGTTCAGACGGTGCGGCAGCCCTTATAACCCATTCtccacctttaaagttgtccaactTTCCTCAAGGAGTTTTGAGTGAAATTAGattgaaatgtataaaacatagtcacacatattttgtttttctactcATTTATTTCCTCTCGTGACAGCGAGCGAGAGATAAAGCGCGGTTTATCTGTAAAGAGCACAGCATCTCCTGCTCacacaggaaacaggaagtcaAACCGCAGCGGCTTCACCGAAAATCatacagcaacaacaacaac

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218997 lncRNA downstream 414 970948 ~ 972143 (-) True G148198
TU218994 lncRNA downstream 3769 967876 ~ 968788 (-) True G148195
TU218992 lncRNA downstream 11654 960629 ~ 960903 (-) False LOC122328005
TU218971 lncRNA downstream 65028 906493 ~ 907529 (-) True G148180
TU218962 lncRNA downstream 84798 881927 ~ 887759 (-) True G148172
TU219450 lncRNA upstream 45087 1018531 ~ 1019039 (-) True G148477
TU219474 lncRNA upstream 83743 1057187 ~ 1057397 (-) True G148492
TU219475 lncRNA upstream 131933 1105377 ~ 1111286 (-) True G148493
TU219501 lncRNA upstream 165567 1139011 ~ 1139427 (-) True G148505
TU219505 lncRNA upstream 173063 1146507 ~ 1147221 (-) True G148509
XM_043223727.1 mRNA downstream 11671 959690 ~ 960886 (-) True LOC122328005
XM_043223577.1 mRNA downstream 13476 941317 ~ 959081 (-) True cacna1sa
XM_043223684.1 mRNA downstream 31535 936431 ~ 941022 (-) True kctd20
XM_043223643.1 mRNA downstream 46936 918418 ~ 925621 (-) False cept1b
XM_043223590.1 mRNA upstream 27087 1000531 ~ 1011607 (-) True lamb3
XM_043223599.1 mRNA upstream 49304 1022748 ~ 1030444 (-) True LOC122327917
XM_043223601.1 mRNA upstream 49304 1022748 ~ 1028938 (-) False LOC122327917
XM_043223824.1 mRNA upstream 65383 1038827 ~ 1048237 (-) True LOC122328113
XM_043223828.1 mRNA upstream 168114 1141558 ~ 1152393 (-) True LOC122328117
TU218822 other downstream 139182 831975 ~ 833375 (-) False arl8a
TU218899 other downstream 184404 783863 ~ 788153 (-) False srsf3b
TU218900 other downstream 184404 783863 ~ 788153 (-) True srsf3b
TU218901 other downstream 184404 783863 ~ 788153 (-) False srsf3b
TU218891 other downstream 292660 675794 ~ 679897 (-) False G148119
unassigned_transcript_2535 other upstream 459413 1432857 ~ 1432930 (-) True trnai-aau_112
unassigned_transcript_2536 other upstream 460001 1433445 ~ 1433515 (-) True trnag-gcc_102
TU219681 other upstream 488429 1461873 ~ 1463176 (-) True G148573
TU219728 other upstream 610300 1583744 ~ 1614538 (-) False LOC122327997
TU219689 other upstream 670266 1643710 ~ 1654340 (-) True G148574

Expression Profile