RNA id: XR_006247764.1


Basic Information

Item Value
RNA id XR_006247764.1
length 350
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122328049
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1458838 ~ 1460885 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTATGTTTTATCAAATCTAAATTTAATACAGCCTTCTACCAGGTGATTTCAGAGCACTTGATGCTTCCATCTGCTAAATAAACTTTGTGCAGATGCTGATTTCCTTTTCCAGCAGAACTTAAGCACCTGTCCACAAAGGCAAGACTACTTCCAAGTGTTTTACTGACCATGATATTCCTTTGGACTGGTCAATTAACTTGCCTGACCTGAAGCCCATATGAAGCCTATGGGATATTTAGCCCTAACTACAGAAATGATAAAACTGATGCCACCATGACTGTTCTGGACATTGGCTTACTGACTGGATTTGATGTTGATGAAAAAGATCTTAAAGAGTTGTCTTCAAGGA

Function

GO:

id name namespace
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219453 lncRNA downstream 11478 1445261 ~ 1447360 (-) True LOC122328029
XR_006247740.1 lncRNA downstream 11502 1446520 ~ 1447336 (-) False LOC122328029
TU219671 lncRNA downstream 23399 1434715 ~ 1435439 (-) True G148569
TU219672 lncRNA downstream 23399 1434715 ~ 1435439 (-) False G148569
TU219656 lncRNA downstream 27499 1378898 ~ 1431339 (-) True G148557
XR_006247756.1 lncRNA upstream 32350 1493235 ~ 1497591 (-) True LOC122328042
XR_006247757.1 lncRNA upstream 32350 1493235 ~ 1495496 (-) False LOC122328042
TU219699 lncRNA upstream 51127 1512012 ~ 1514382 (-) True G148581
TU219700 lncRNA upstream 51127 1512012 ~ 1514382 (-) False G148581
TU219722 lncRNA upstream 101690 1562575 ~ 1563966 (-) False G148594
XM_043223709.1 mRNA downstream 31536 1423876 ~ 1427302 (-) True LOC122327988
XM_043223828.1 mRNA downstream 306445 1141558 ~ 1152393 (-) True LOC122328117
XM_043223824.1 mRNA downstream 410601 1038827 ~ 1048237 (-) True LOC122328113
XM_043223599.1 mRNA downstream 428394 1022748 ~ 1030444 (-) True LOC122327917
XM_043223605.1 mRNA upstream 109591 1570476 ~ 1865956 (-) True LOC122327919
XM_043223606.1 mRNA upstream 109591 1570476 ~ 1610253 (-) False LOC122327919
XM_043223607.1 mRNA upstream 109591 1570476 ~ 1574910 (-) False LOC122327919
XM_043223717.1 mRNA upstream 119405 1580290 ~ 1582417 (-) True LOC122327995
XM_043223719.1 mRNA upstream 122130 1583015 ~ 1584544 (-) True LOC122327997
unassigned_transcript_2536 other downstream 25323 1433445 ~ 1433515 (-) True trnag-gcc_102
unassigned_transcript_2535 other downstream 25908 1432857 ~ 1432930 (-) True trnai-aau_112
TU218822 other downstream 625463 831975 ~ 833375 (-) False arl8a
TU218900 other downstream 670685 783863 ~ 788153 (-) True srsf3b
TU219681 other upstream 988 1461873 ~ 1463176 (-) True G148573
TU219728 other upstream 122859 1583744 ~ 1614538 (-) False LOC122327997
TU219689 other upstream 182825 1643710 ~ 1654340 (-) True G148574
TU219752 other upstream 200300 1661185 ~ 1664627 (-) True G148613
TU219884 other upstream 653453 2114338 ~ 2116183 (-) False LOC122328032

Expression Profile