RNA id: unassigned_transcript_2548


Basic Information

Item Value
RNA id unassigned_transcript_2548
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnaa-agc_19
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16126536 ~ 16126608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggggaattagctcaaatggtagagcgctcgcttagcatgcgagaggtagcgggatcgatgcccgcattctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227020 lncRNA upstream 47668 16078273 ~ 16078868 (+) False LOC122327825
TU227009 lncRNA upstream 143714 15982592 ~ 15982822 (+) True G153321
TU227008 lncRNA upstream 145190 15981122 ~ 15981346 (+) True G153320
TU226822 lncRNA upstream 233398 15891038 ~ 15893138 (+) False LOC122327891
TU227040 lncRNA downstream 36775 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA downstream 36775 16163383 ~ 16164196 (+) False LOC122327131
TU227043 lncRNA downstream 44285 16170893 ~ 16171468 (+) False LOC122327131
TU227077 lncRNA downstream 123832 16250440 ~ 16250973 (+) True G153364
TU227140 lncRNA downstream 177123 16303731 ~ 16305650 (+) True G153399
XM_043222436.1 mRNA upstream 26729 16098731 ~ 16099807 (+) True LOC122327228
XM_043223458.1 mRNA upstream 47641 16077581 ~ 16078895 (+) True LOC122327825
XM_043223557.1 mRNA upstream 170226 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA upstream 170576 15943733 ~ 15955960 (+) False LOC122327890
XM_043222435.1 mRNA upstream 188354 15901132 ~ 15938182 (+) True LOC122327226
XM_043222437.1 mRNA downstream 26534 16153142 ~ 16155551 (+) True LOC122327230
XM_043222314.1 mRNA downstream 36781 16163389 ~ 16171629 (+) True LOC122327131
XM_043222315.1 mRNA downstream 36781 16163389 ~ 16171629 (+) False LOC122327131
XM_043223165.1 mRNA downstream 106999 16233607 ~ 16237021 (+) True LOC122327679
XM_043223756.1 mRNA downstream 114555 16241163 ~ 16244542 (+) True LOC122328055
unassigned_transcript_2545 other upstream 4024 16122440 ~ 16122512 (+) True trnaa-agc_18
TU227010 other upstream 90921 16004564 ~ 16035615 (+) True G153322
TU226683 other upstream 909594 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1434728 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1663876 14458149 ~ 14462660 (+) True G152767
unassigned_transcript_2549 other downstream 1302 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 2678 16129286 ~ 16129358 (+) True trnaa-agc_21
unassigned_transcript_2553 other downstream 4025 16130633 ~ 16130705 (+) True trnaa-agc_22
unassigned_transcript_2556 other downstream 8124 16134732 ~ 16134804 (+) True trnaa-agc_23
unassigned_transcript_2559 other downstream 9512 16136120 ~ 16136192 (+) True trnaa-agc_24