RNA id: unassigned_transcript_2563


Basic Information

Item Value
RNA id unassigned_transcript_2563
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnaa-agc_25
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16138850 ~ 16138922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggggaattagctcaaatggtagagcgctcgcttagcatgcgagaggtagcgggatcgatgcccgcattctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227020 lncRNA upstream 59982 16078273 ~ 16078868 (+) False LOC122327825
TU227009 lncRNA upstream 156028 15982592 ~ 15982822 (+) True G153321
TU227008 lncRNA upstream 157504 15981122 ~ 15981346 (+) True G153320
TU226822 lncRNA upstream 245712 15891038 ~ 15893138 (+) False LOC122327891
TU227040 lncRNA downstream 24461 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA downstream 24461 16163383 ~ 16164196 (+) False LOC122327131
TU227043 lncRNA downstream 31971 16170893 ~ 16171468 (+) False LOC122327131
TU227077 lncRNA downstream 111518 16250440 ~ 16250973 (+) True G153364
TU227140 lncRNA downstream 164809 16303731 ~ 16305650 (+) True G153399
XM_043222436.1 mRNA upstream 39043 16098731 ~ 16099807 (+) True LOC122327228
XM_043223458.1 mRNA upstream 59955 16077581 ~ 16078895 (+) True LOC122327825
XM_043223557.1 mRNA upstream 182540 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA upstream 182890 15943733 ~ 15955960 (+) False LOC122327890
XM_043222435.1 mRNA upstream 200668 15901132 ~ 15938182 (+) True LOC122327226
XM_043222437.1 mRNA downstream 14220 16153142 ~ 16155551 (+) True LOC122327230
XM_043222314.1 mRNA downstream 24467 16163389 ~ 16171629 (+) True LOC122327131
XM_043222315.1 mRNA downstream 24467 16163389 ~ 16171629 (+) False LOC122327131
XM_043223165.1 mRNA downstream 94685 16233607 ~ 16237021 (+) True LOC122327679
XM_043223756.1 mRNA downstream 102241 16241163 ~ 16244542 (+) True LOC122328055
unassigned_transcript_2559 other upstream 2658 16136120 ~ 16136192 (+) True trnaa-agc_24
unassigned_transcript_2556 other upstream 4046 16134732 ~ 16134804 (+) True trnaa-agc_23
unassigned_transcript_2553 other upstream 8145 16130633 ~ 16130705 (+) True trnaa-agc_22
unassigned_transcript_2551 other upstream 9492 16129286 ~ 16129358 (+) True trnaa-agc_21
unassigned_transcript_2549 other upstream 10868 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2570 other downstream 6758 16145680 ~ 16145752 (+) True trnaa-agc_26
unassigned_transcript_2572 other downstream 8143 16147065 ~ 16147137 (+) True trnaa-agc_27
unassigned_transcript_2576 other downstream 10850 16149772 ~ 16149844 (+) True trnaa-agc_28
TU227165 other downstream 178539 16317461 ~ 16386176 (+) False rpl32
TU227194 other downstream 354780 16493702 ~ 16499413 (+) True G153432