RNA id: unassigned_transcript_2572


Basic Information

Item Value
RNA id unassigned_transcript_2572
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnaa-agc_27
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16147065 ~ 16147137 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggggaattagctcaaatggtagagcgctcgcttagcatgcgagaggtagcgggatcgatgcccgcattctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227020 lncRNA upstream 68197 16078273 ~ 16078868 (+) False LOC122327825
TU227009 lncRNA upstream 164243 15982592 ~ 15982822 (+) True G153321
TU227008 lncRNA upstream 165719 15981122 ~ 15981346 (+) True G153320
TU226822 lncRNA upstream 253927 15891038 ~ 15893138 (+) False LOC122327891
TU227040 lncRNA downstream 16246 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA downstream 16246 16163383 ~ 16164196 (+) False LOC122327131
TU227043 lncRNA downstream 23756 16170893 ~ 16171468 (+) False LOC122327131
TU227077 lncRNA downstream 103303 16250440 ~ 16250973 (+) True G153364
TU227140 lncRNA downstream 156594 16303731 ~ 16305650 (+) True G153399
XM_043222436.1 mRNA upstream 47258 16098731 ~ 16099807 (+) True LOC122327228
XM_043223458.1 mRNA upstream 68170 16077581 ~ 16078895 (+) True LOC122327825
XM_043223557.1 mRNA upstream 190755 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA upstream 191105 15943733 ~ 15955960 (+) False LOC122327890
XM_043222435.1 mRNA upstream 208883 15901132 ~ 15938182 (+) True LOC122327226
XM_043222437.1 mRNA downstream 6005 16153142 ~ 16155551 (+) True LOC122327230
XM_043222314.1 mRNA downstream 16252 16163389 ~ 16171629 (+) True LOC122327131
XM_043222315.1 mRNA downstream 16252 16163389 ~ 16171629 (+) False LOC122327131
XM_043223165.1 mRNA downstream 86470 16233607 ~ 16237021 (+) True LOC122327679
XM_043223756.1 mRNA downstream 94026 16241163 ~ 16244542 (+) True LOC122328055
unassigned_transcript_2570 other upstream 1313 16145680 ~ 16145752 (+) True trnaa-agc_26
unassigned_transcript_2563 other upstream 8143 16138850 ~ 16138922 (+) True trnaa-agc_25
unassigned_transcript_2559 other upstream 10873 16136120 ~ 16136192 (+) True trnaa-agc_24
unassigned_transcript_2556 other upstream 12261 16134732 ~ 16134804 (+) True trnaa-agc_23
unassigned_transcript_2553 other upstream 16360 16130633 ~ 16130705 (+) True trnaa-agc_22
unassigned_transcript_2576 other downstream 2635 16149772 ~ 16149844 (+) True trnaa-agc_28
TU227165 other downstream 170324 16317461 ~ 16386176 (+) False rpl32
TU227194 other downstream 346565 16493702 ~ 16499413 (+) True G153432
XR_006247623.1 other downstream 453495 16600632 ~ 16746075 (+) False dock3
TU227461 other downstream 1268316 17415453 ~ 17419233 (+) False tsc22d2