RNA id: TU227608


Basic Information

Item Value
RNA id TU227608
length 839
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G153753
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 361649 ~ 363238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGCTACCTGCTATCTGCTACCTGCTATCTGCTACCTGCTATCTGCTAcctgctacctgctatctacTACTGATCCCTGTGATTGTGATTTGTGTTActggttattattgtttgtttttgttttgtttaaagtggtTCTGCTTGAGGGCATCTATTTGATTATGGAGTAGCCGGTGCCCTGTGTGGATTTTGCTCCTCCATTGTGGAActacaaaaattgtattctttttctttccttttttataatttgtgtattttttgttttgttggacattttgtattgtttatattcaacattagtTTGCCTtggttgaatttgtttgttcgtttccTTTTTCTTGTGACATTATTGCCTGGATTAGTGTGTAAGGTTTTGGTTTGTGTAATACACATTGcatatactcattttatttttatcttcttacAGGAGCTGGGGTTCCACGGGTGCAGGAGCTTGAGGTGGTGGTGTCACTTCATCATTTGCTGTGGacacgtttgtgtgtgcagtgagtgtgtcggggtgtgtgtgtggaggtgtgtAAGTGTGCTTTTGGCTAAATTCAGCACTGGTGATCACTCCCGTGGGTGACCTCAGCCCTTTACCATTGGAGAGTGCTGCCGGCAGTAGGTGATGAGGATtcaatgtgacttttaaatggtgaaacaattgtgaaaataaattttgtacttTCATGCTTTACTCACGTCTCTCGCCTATTCATATGAGAATTGAACCTGTGTGGCCAAATAGTCATATTTGAGCTAGTTCTATTTCCTGGGGGAGAACTCTCCAGGTGGCGTAGTCGGATTCGCTATAGGTGAAGGATTTAAAGTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247796.1 lncRNA downstream 41023 320273 ~ 320626 (-) True LOC122328463
TU227603 lncRNA downstream 84841 276168 ~ 276808 (-) True G153750
TU227602 lncRNA downstream 93468 267916 ~ 268181 (-) True G153749
TU227619 lncRNA upstream 213318 575924 ~ 584582 (-) False G153757
TU227621 lncRNA upstream 213318 575924 ~ 584582 (-) False G153757
TU227622 lncRNA upstream 213318 575924 ~ 584582 (-) False G153757
TU227631 lncRNA upstream 213318 575924 ~ 584582 (-) False G153757
TU227634 lncRNA upstream 213318 575924 ~ 584582 (-) True G153757
XM_043225342.1 mRNA downstream 51072 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 95617 258605 ~ 266032 (-) True LOC122329136
XM_043224276.1 mRNA upstream 417422 780028 ~ 785879 (-) False ndnl2
XM_043224278.1 mRNA upstream 446318 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA upstream 446318 808924 ~ 816154 (-) False tnnc1a
XM_043225308.1 mRNA upstream 503109 865715 ~ 871569 (-) False vgll4a
XM_043225136.1 mRNA upstream 520586 883192 ~ 895323 (-) False raf1a
XR_006247804.1 other upstream 416479 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 657166 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 693406 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 1145092 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 1145204 1507810 ~ 1512291 (-) False smim29

Expression Profile