RNA id: TU227638


Basic Information

Item Value
RNA id TU227638
length 1105
lncRNA type inter_gene
GC content 0.48
exon number 7
gene id G153757
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 575924 ~ 584582 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TgtaacagccaatcagcagtaagtGTGACCTATTTTAGAGCAGGTTGGCTTTGTTGGGTCATGCGTCACCTCCGCcccgcctttttttttttgttatgttgactTGTGTTTTAGcctgtcttttcctttgttttctgtcgatggccatgagtttaatgactgctgtttattcaggtAAGCGCTTAATACTGCTAGAAAATGGGTTGGTATGGACGGAGTGCGCAGTTTGAATAATAGGCAGTTTCCTGTACCTAGCTTGTTGTTATTGGTATTACTGAGGATGCGAATCCCAATTTGTGAATGCGTGCGAGCATACTTTTTCCGGTTTGGATTCTCCCTTTCGTCCTGGGCGATTAAATGCGCCGTTCCTGACGTTTTTTTCCTGTCGCGCCGTGAACTTTCGGTTACTCGGAAGTCTTAGTTGATACGGAGATCTATTACCCGCTACCTGCTTCCCGCTACCTGCTTCCCGCTACCTGCTACCTGCTATCTGCTAcctgctacctgctatctacTACTGATCCCTGAGCTGGGGTTCCACGGGTGCAGGAGCTTGAGGTGGTGGTGTCACTTCATCATTTGCTGTGGacacgtttgtgtgtgcagtgagtgtgtcggggtgtgtgtgtgtgtgtggaggtgtaAGTGTGCTTTTGGCTAAATTCAGCACTGGTGATCACTCCCGTGGGTGACCTCAGCCCTTTACCATTGGAGAGTGCTGCCGGCAGTAGGTGATGAGGATtcaatgtgacttttaaatgGAGCTGGGGTTCCACGGGTGCAGGAGCTTGAGGTGGTGGTGTCACTTCATCATTTGCTGTGGacacgtttgtgtgtgcagtgagtgtgtcggggtgtgtgtgtgtgtgtgtggaggtgtaAGTGTGCTTTTGGCTAAATTCAGCACTGGTGATCACTCCCGTGGGTGACCTCAGCCCTTTACCATTGGAGAGTGCTGCCGGCAGTAGGTGATGAGGATtcaatgtgacttttaaatggtgaaacaattgtgaaaataaattttgtacttTCATGCTTTACTCACGTCTCTCGCCTATTCATATGAGAATTGAACCTGTGTGGCCAAATAGTCATATTTGAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227606 lncRNA downstream 212686 361649 ~ 363238 (-) False G153753
TU227608 lncRNA downstream 213318 361649 ~ 362606 (-) True G153753
XR_006247796.1 lncRNA downstream 255298 320273 ~ 320626 (-) True LOC122328463
TU227603 lncRNA downstream 299116 276168 ~ 276808 (-) True G153750
TU227602 lncRNA downstream 307743 267916 ~ 268181 (-) True G153749
TU227643 lncRNA upstream 94452 679034 ~ 683111 (-) True G153760
TU227900 lncRNA upstream 185931 770513 ~ 776050 (-) True G153911
TU227876 lncRNA upstream 257137 841719 ~ 845010 (-) True G153893
TU227922 lncRNA upstream 280895 865477 ~ 866747 (-) False vgll4a
TU227921 lncRNA upstream 281229 865811 ~ 882184 (-) False vgll4a
XM_043225342.1 mRNA downstream 265347 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 309892 258605 ~ 266032 (-) True LOC122329136
XM_043224276.1 mRNA upstream 195446 780028 ~ 785879 (-) False ndnl2
XM_043224278.1 mRNA upstream 224342 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA upstream 224342 808924 ~ 816154 (-) False tnnc1a
XM_043225308.1 mRNA upstream 281133 865715 ~ 871569 (-) False vgll4a
XM_043225136.1 mRNA upstream 298610 883192 ~ 895323 (-) False raf1a
XR_006247804.1 other upstream 194503 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 435190 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 471430 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 923116 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 923228 1507810 ~ 1512291 (-) False smim29

Expression Profile