RNA id: TU227875


Basic Information

Item Value
RNA id TU227875
length 1220
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G153893
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 841719 ~ 899766 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTCATCCTCCTCCAACTTTATTGACAGCTTAAAATTACATATCTATGTTCTAGGACTTAAGTTGCAATTTCCTTCTGACTTAAAAACTGAGTACAAGCAATGATATTCTTACAGTAGTCCAAGTGATATTGTACAAAAATATCTGATTTCTgtgaaaacattcttttttttttttttgcaaattgttGCTAATTTCACGTCTCTATTGTACTGGATAATTTAAAGGTAGAAAGGACTAAAATTACTGTGTAATGTTCAGCATTAACAAGCAGTTTGCTGAACCTGCAAACAtgactttagaaaaaaaaaaaaaaatctaaaataaaaaaaaaaggcaaaataaaaaaaaaaaaaaaaaaaccaaaatgatttctgaaagtcaaattaattgaaatataccATTATAACATATTTCCttaggagacacacacactttgcaAGTGGGCACCAGATCATAATGGACTTCCTGTGATGAAAATGGCCTTTCTTAAGTCTGCTTTCACTTTTCTCCATATAACcactaaacaaaagaaaacgaAACACCAGAATTGAGCCTTCGTCTGACTTCTCTCTTACATTTGAGATATGGTTCACTTCCATGAACCCAGAGGTTGCCTGTGGCGCCGGATGTCCCAGTAATGGATCTTTTCACCAGTGGCGAGGAAAGGGGTCCCTTAACAAAGCGTCATAATTTCACCTCTacctaaataaacatttcaatttaaacgcaatatgtttttttttttttttcaccccttTTCTTCGtaacaaaggaaaaacaaaactcaaagcTGCTCACTGGCCTGGGAAAGGCCTCTGCTTGCCAGCCTTTGGCCAATGAAGAGGATTCAGAGAAGAGAAACAACCATCAATCAGGAAAGGAGGGGTGACAGAGGAAAGGAGTTACGCAGACGCTTCAATGGTGCATTCTCTGGCCAGGTGACCGGTCTTGCCGCAGTTGTAGCAGTTCACCTCAGTCGCCTTGCTGCACTGCACAGCCACATGACCGATCTCGCCACACGGTAACATTTGACCTTGTCACACAGTTTCTGGATGTGTCCGAACCCTCCGCAGGAGTAGCACTTCTGCTCGTTGGCGTGGTCACAGTCACGGGCCACGTGACCGGCTTTCCCGCAGTTATAGCAACActgctctctctcctttttGGGTTCTTTACAGTCTCTGGAAATATGGCCACTCCGGTGGCAATTGTAGCat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227921 lncRNA downstream 15996 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA downstream 15996 878522 ~ 882184 (-) True vgll4a
TU227922 lncRNA downstream 31433 865477 ~ 866747 (-) False vgll4a
TU227876 lncRNA downstream 53170 841719 ~ 845010 (-) True G153893
TU227900 lncRNA downstream 122130 770513 ~ 776050 (-) True G153911
XR_006247797.1 lncRNA upstream 60508 960274 ~ 963577 (-) True LOC122328476
TU227992 lncRNA upstream 305713 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 305713 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 306934 1206700 ~ 1207587 (-) True G153967
TU228019 lncRNA upstream 489596 1389362 ~ 1393135 (-) True G153984
XM_043225136.1 mRNA downstream 2857 883192 ~ 895323 (-) False raf1a
XM_043225137.1 mRNA downstream 2857 883192 ~ 895323 (-) False raf1a
XM_043225134.1 mRNA downstream 2857 883192 ~ 895323 (-) False raf1a
XM_043225135.1 mRNA downstream 2857 883192 ~ 895323 (-) False raf1a
XM_043225133.1 mRNA downstream 2857 883192 ~ 895323 (-) True raf1a
XM_043225490.1 mRNA upstream 3742 903508 ~ 905461 (-) False gp9
XM_043225489.1 mRNA upstream 3742 903508 ~ 905461 (-) True gp9
XM_043225483.1 mRNA upstream 5845 905611 ~ 958977 (-) True LOC122329272
XM_043225487.1 mRNA upstream 5845 905611 ~ 944006 (-) False LOC122329272
XM_043225485.1 mRNA upstream 5845 905611 ~ 934264 (-) False LOC122329272
XR_006247804.1 other downstream 112301 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 120006 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 156246 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 607932 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 608044 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 608044 1507810 ~ 1512329 (-) False smim29

Expression Profile