RNA id: TU227900


Basic Information

Item Value
RNA id TU227900
length 3626
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G153911
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 770513 ~ 776050 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGAGTACTGCTCTGGAggtaatattaaacattttcagtcCTCCCATAAAAAGATTTATGAACTTACCTGGTagcaattttaaaaagataatgaGGCTGTAGTATTGGTAACAGGCTGTAATTGGGTTGGCTTTCTAGACTGGGGGTTGACTTTCTAGACAATACTTCTTTCAAGcctgaatgaatgagtgaagtctttatttgtatagttttttttagcttgtttgCTTGTGTGGAAACAATGATAGGCTAAGTAACAAATAGCAGAGTGCATGGACAGTGgcacttaaaaataacatttaacacttttaaatcaATACAGAAATCCAGGTTGTTCAAAAAGGTTCACAATTTGCAACTTTACAGCTTCAGTATTGTAATAAAGTTCCAGTAGTTTGTTCTGAAAGATTTTTTCTACCTGAGCTTTTGTCCAGGAAGTACGCCAGAAGACAGCGCATGACAGCCTGATGACATATGACGAGAACATTTTCTTGGCGCTCAAGCTCCATGATTACAGGCTCTAAGCGCTGAACTAGATCTTCATAAGACTGAACACAGACAAATACACAAGCATTGCAATAAACAAGGATAAAAACACCTCCAACAATAGCTCACTCCATGTTCACAAATGTTCAcagatttgattaaaatatctgGATTAAGTTGTCTAGTATTACTGTGCATTCTTGTGTTCCCCCGAAATGGGCAGATGTATCAATACTCAAAGCTATGATCAGCAATGCAGCAAAGTAATTACATCACATCTGTCAGGACACAGGTGAGTGATACTCAATAGATGAGAACTGAGTGGCTTTTCTGAAAGTAGATGTTCTGCAGGTAACCGAACATGCATTAAATGGTGTTAAGAAGGTGGTGGATTGTGTGAGGGAGTTCTGGGCATACTAGGCCCAGGGAAGTAAGTGGTTGTAGGCTCTTGGATCTTGCACTCAATCTCACGATTAGGTACCCTACAAGAGCTGGAGGGAATATTGCCTTTGGAGGCATGAAACCGAGAAAGTGCATCAGCCTGGAGATTCTGGCTTCCAGGACTGTAGGTGAATTGGAAGAATGTGAAGAACAAGGCCCAGTAAGTTGATGAGGGTTTGAGTGCTTTGCATATCTAAGATATTGCAAGATATTGCAAATTTTTGTGGTCTAATATAAAGGTGAAGGAAGAAGAAGCCTTCTCCCGCCAGTAATACCACTCTTCCGGAGCTAACTTGATGGCAAGGAGTTCTGGTCTGGAGAGATCAGTTTCAGACAGAAGTAATTGCAAGAATGGAGGCAGGGAGGCTCACTGTTGCCCCAACACCGATGGTCGAGGCATCCACCTTTAAAAAGGGACTTGTGGATCCAGGAGATGAAGGATTATGGCCATGCTGAATGCTTCCTTAAGATGACGAAAGGTTTCTTGGGCTTTCGGGTTCCAGGCCAATGATTTGGGCTTGCTGTGCAGCAAGAGGCAAACTGTTAAACTGTTGAATAAATCATCTGTAGGAGTTGTCAAATCCAAAAAACTGCTTTAGTTCATTCACTGACTGCAGGAGAGGCCATTGTTGAATGGCAGTTACCTTCCCCTGGTCCATTTGAATCCCTTTGGGGCTGATGTTAGCATGTTTGTGGAACTGGATAATTAAGCGATGGAACTAACATTTTCCCATCTTCAGATGAAGGTGGTGTTCTCTGAGTCACTGAAGGACCTGCTTCATGTAGTGGTGGTGTTCTGCCAGGTTCCGGGAGTATATCCTTATGAATGTCATCAATTTAGACAATCTCAAACTGATGGAGGAACTCCTGGAACACCTTGTTTATGAATCACTGTAATACTGACAATGAGGCCATTTAGCATAAGCCAGTATTCTTAGTGGCCTAAGTGTGTTGTGATGAAGGCTGTCTTTCTTGAATAGTTTAAACTCAGTGCTCACTGAGGTGCAGCTTACAGGATAGGTAGAACCTGGTTAGGAGGACATGGGAAATTAAGCTCTGAGGAGCCTGAGTTGATAAGGGTGGAGAGTAGAATAGAGGAATCCAAAATAAGTAATTGTACTTGTGCAGTGATAGTGTGGCAATATCAGGCTCGAGTTGAATAGCTAACTTaatataatttgaatgtttcaatATGGGTTGacataaattactttattttaatgtttgagaCAACATGGCACAGAgttcttaaaaaagaaatgcaaagtgAAATTATTGCTTGATGACATTAGGAACCAACAAATCAGATTTTTGAACCAGTTCAATGAGCTAAACTGTCCGAAAAGAACCAGTTCATGGAAAAGATTCAGACTTTGCATCACTAGTGAGTGATACTCAATGGATGACATCCGAGTGGCTTTACTGGAGGTAACAGTCCTTTCTATTCTGTAGCAACTATGGAGAATGGCCGATACAATAGAGCAACAGAAACGTCTGAGGTAAAGAAGAAATACAGGTAAGGATTAAAGAATGCAGAAGTATGGCTTGGTTCAGGTAAGTGAATAGTAGGCCTGACACCAGAGATTGCAGTGAGTGTGCTGATGTAAGAGCCCGTGATTgtgtttataatgtgtttatatattcatgatttttagtatttgttcaagttttacattattattttaatgttgtaattagctattaatattttatctttgAAGCAGCTTTGTTACATGAAAGCATTTAAGTCTGTTTAAGGTCAAAATCAAGTTTTCTGCATCTCCTGTGTACAATCAACCCTCTCCCATAACAGCTGTCACCagtcaaattttaaaataatgaaaataataattattataaaattataataaatatgattaataataataataataataataataataataattattattattattattattattattattgtgcctGGATCAGTAGGATGTTCTTGTAATAAAGTAGCAGTGCCTGGGACAGATTTTAAGTGTCCATTCTGTATACAAAGTTGCAATCTAATTCTGTTTACATGAAATAAGTCAACTTCCAAGTGGGTTTAAATTTTACGGACCTGTTGCTATGACAGCAACTCCGAGATCAACCGAATGAACAAAACCTAAACCGAgattcatttgcattatttgtcattaaaatgtatgcatcaGTTCAACAAATTACCCACATAACttataaattcctaatttgtcTTGCCACAATATATACTCACTTCACCCTTTGGATAGCGGTACCGATATTTGTCTTGGTCTCTGAGAGCAAACTCCTCAGGAAAGTGATCTTGAATTGCTTCATAAGTCATCTCCTCACACACACAGCATCAATCTCATTAAGTGCTTTCCACTGTTCATAAGGCACTCCAATTGCCTCTGCAGTCTGGATTGTTCTTCTCATGTGACTGGTCCAGATCTTCAAATCCAGGATGCACTGACCCCTGATGTATGTGCCTAAAGCTGCAGCAAACTGATTCCTCGTGGTGAGAGTCCGGTATCACCTCCAATACGCCCCAAAAGGTTGAGTTCGCTCTCTCCATGACGACAGAGGTAGATAGTGCGAGGTGTGACATGGATGTTCATCAGATAGTAGACGATCCTGCTCTGAATATGATCTTGAACCTGATTAACCAGGTACCTGCTGCCCACGTTAAAGATCTTAATGTAAGACAGGTTTC

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227643 lncRNA downstream 87402 679034 ~ 683111 (-) True G153760
TU227621 lncRNA downstream 185931 575924 ~ 584582 (-) False G153757
TU227876 lncRNA upstream 65669 841719 ~ 845010 (-) True G153893
TU227922 lncRNA upstream 89427 865477 ~ 866747 (-) False vgll4a
TU227921 lncRNA upstream 89761 865811 ~ 882184 (-) False vgll4a
TU227919 lncRNA upstream 102472 878522 ~ 882184 (-) True vgll4a
TU227875 lncRNA upstream 122130 898180 ~ 899766 (-) False G153893
XM_043225342.1 mRNA downstream 459936 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 504481 258605 ~ 266032 (-) True LOC122329136
XM_043224276.1 mRNA upstream 3978 780028 ~ 785879 (-) False ndnl2
XM_043224278.1 mRNA upstream 32874 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA upstream 32874 808924 ~ 816154 (-) False tnnc1a
XM_043225308.1 mRNA upstream 89665 865715 ~ 871569 (-) False vgll4a
XM_043225136.1 mRNA upstream 107142 883192 ~ 895323 (-) False raf1a
XR_006247804.1 other upstream 3035 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 243722 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 279962 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 731648 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 731760 1507810 ~ 1512291 (-) False smim29

Expression Profile