RNA id: TU227921


Basic Information

Item Value
RNA id TU227921
length 2385
lncRNA type sense_over
GC content 0.35
exon number 4
gene id vgll4a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 865477 ~ 882184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGAGTTGAATGTGCTTAACTTTCAGACAATGTTTGttcagagttttatttttattgctcatTGTTATGTAATCGCATGTCTGCAATAAATATTAgtaacaagaacaaaaaataaacaaaaaactatagCTTTCATCCATTGTGGCAAATACATTTCACCATATTTTATAACACTTTCACAATACTATAAGTGCATACAGTATGATATCTATTATTTTAACAGTGATGTCACGAAAGAAAATACACACCTTACCTTTAAcacacaatgacacacacacatttgatcatgcaattaaatgttcatttatatgtTATAGTCTCCATTCATGTATGTATAACACCAttcgcacatgcacacacacacacacacacaaacatactggttttaatgttttatgggTTTATTCCATAgacgtaatggtttttatattgtacaaactgttttttttacccTAATATACCCTTTAACCTACCCCTCACGCACAACTTTCTGCACTTTTACTTTTTCCCAAAAATTGCATGATTTATAAGCGGTTTCCCTCATGAGGACTAAAAAAATATCCCCACAAGGACAAAatttactgatatttttatACTAGCTGgaacatttggtccccataatgCAGCGAACACCATTTACTAAAACGTAACACAagagacaattaaaaaaataagtacaaggAAAAAGTGGCACTGAACACTAGGCACAATCTGCTGTATCACCACACAACAACCCTGAAGAGACAACCGCTTCACATAGAAACAAAGCAACCATCACAAGCGCAGAACAGTGAAAGTTACACAGTACAGACTGAAATACAGATCAGGCCCAAACTAAGACTTTTCTTATAGATTATTTGTTGCCTTGCACCTCAGGTCACCGTCTGAATGTTTGAACACAACCTGTCAGGAGCTTAAATGCTTCAAGCCTTCACGTTTAGTTCGCCTGCACTAATTTTGGTCCCACTGCAACGCCATTACAGTCAAGGATGTACTGCAAGCAGCCTTGTGGAGGAGCTTTCTGTGGAGGGCCATTCTTTACTTCAACCACCATGTCTTTCTCAACAGCATTCTTTTTTTGGCTGAATAGCAGTTGGCCTTTTGGGATTTTGTGCCTTAACGTTATTCATTTTGGCAATGACCATGTCTGCTATCAGCTGCTGATCTTCGGCCTGATGTTCCCCCACCAGTGGCATGGACGAACCCATGACCTGATGAAATCACCATCGTTGTTAGCAAAACACGTTGCTTGAATTTGTAGAAAACCTACAACACATTTCTACAAAACATCTCAGCTGTACAACACACTCTTAAAACCCTGCGGccttatatatattataaatataatCAACTGCTGGAACAGtgtgttctatatatatatatatatatatatatatatatatatatatatatatatatataaaatttctaACCTGTTTCGTGAGATGTGTATGCAGCTGGTTAGGCCTCTGGAAAGGCACTGACACATGCAGTATCTGGCTTAATTGAGTTTTAACTTAACGTTTAACTTTGTACTCTTTTCATAATCCGCTACAACACATTTTTCTGTAATGATCAATACAACTAAATCAGTAAGTGTTAACACCGCTGTGGGAGTTACCGTAAATCTGTCTCTTTCGTGATTTCCATAATCCTTCTTTGTAATCCacttttatggaaagtaatcaGAGCGCCAATAGTGgtctttttgtgtttgctgttgGACACagcaacattaaataatttggtATTGTTTGCCATGTAGGTTTACCCTAGTATAGTTTACTACTATGctgtggaaatgtaaaaaaagggtTCATACGTGAACACTTTCTGATTTGCATATTCTAATAccaattaatatatttactttaattgcACATTGACCTGAACATGAGTATCCACTCTTTCTATGTTCCAGCTTTATTGCTTTCAGTGAATTAattgtttgtctgtttattattattattaatcgaCTAGTAACCagaattaaatgtaatctttgtGTGTGGTGTCATAATGCAGGATGCacactaaattatttaatttctttatctttcttttttttttttttccttatttgttcaacttccagaatataaaatatgacaatCATTATGCTGTGCGTGATGAATATAGTTACTCATATGAAACTATCTGTCATTAACTATTGTGCATGCTCTTCTTTTCTTCGTAATGTACCTGCTGAATATTAATTTAGATGTAATATGTTGAGCCGTCTAACTATGCTAAACTGAAAACTGTTTAGTTGTTAATTGAACAAAGTCTCACGAATGTCCCGTTTGACATGGGtaaagcatttcaaaataatgaaatgaaagggCAATATAACAAATTTTGACATGACAGTGGCTGTGCCGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227876 lncRNA downstream 20801 841719 ~ 845010 (-) True G153893
TU227900 lncRNA downstream 89761 770513 ~ 776050 (-) True G153911
TU227643 lncRNA downstream 182700 679034 ~ 683111 (-) True G153760
XR_006247808.1 lncRNA downstream 281320 583143 ~ 584491 (-) True LOC122328559
XR_006247809.1 lncRNA downstream 288977 575989 ~ 576834 (-) True LOC122328560
TU227875 lncRNA upstream 15996 898180 ~ 899766 (-) False G153893
XR_006247797.1 lncRNA upstream 78090 960274 ~ 963577 (-) True LOC122328476
TU227992 lncRNA upstream 323295 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 323295 1205479 ~ 1206602 (-) True G153966
TU227998 lncRNA upstream 324516 1206700 ~ 1207587 (-) True G153967
XM_043224278.1 mRNA downstream 31230 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA downstream 49657 808924 ~ 816154 (-) False tnnc1a
XM_043224276.1 mRNA downstream 79932 780028 ~ 785879 (-) False ndnl2
XM_043225342.1 mRNA downstream 555234 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 599779 258605 ~ 266032 (-) True LOC122329136
XM_043225136.1 mRNA upstream 1008 883192 ~ 895323 (-) False raf1a
XM_043225137.1 mRNA upstream 1008 883192 ~ 895323 (-) False raf1a
XM_043225134.1 mRNA upstream 1008 883192 ~ 895323 (-) False raf1a
XM_043225135.1 mRNA upstream 1008 883192 ~ 895323 (-) False raf1a
XM_043225133.1 mRNA upstream 1008 883192 ~ 895323 (-) True raf1a
XR_006247804.1 other downstream 79932 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 137588 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 173828 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 625514 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 625626 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 625626 1507810 ~ 1512329 (-) False smim29

Expression Profile