RNA id: TU227922


Basic Information

Item Value
RNA id TU227922
length 1251
lncRNA type sense_over
GC content 0.31
exon number 2
gene id vgll4a
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 865477 ~ 882184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTATGCAGCTGGTTAGGCCTCTGGAAAGGCACTGACACATGCAGTATCTGGCTTAATTGAGTTTTAACTTAACGTTTAACTTTGTACTCTTTTCATAATCCGCTACAACACATTTTTCTGTAATGATCAATACAACTAAATCAGTAAGTGTTAACACCGCTGTGGGAGTTACCGTAAATCTGTCTCTTTCGTGATTTCCATAATCCTTCTTTGTAATCCacttttatggaaagtaatcaGAGCGCCAATAGTGgtctttttgtgtttgctgttgGACACagcaacattaaataatttggtATTGTTTGCCATGTAGGTTTACCCTAGTATAGTTTACTACTATGctgtggaaatgtaaaaaaagggtTCATACGTGAACACTTTCTGATTTGCATATTCTAATAccaattaatatatttactttaattgcACATTGACCTGAACATGAGTATCCACTCTTTCTATGTTCCAGCTTTATTGCTTTCAGTGAATTAattgtttgtctgtttattattattattaatcgaCTAGTAACCagaattaaatgtaatctttgtGTGTGGTGTCATAATGCAGGATGCacactaaattatttaatttctttatctttcttttttttttttttccttatttgttcaacttccagaatataaaatatgacaatCATTATGCTGTGCGTGATGAATATAGTTACTCATATGAAACTATCTGTCATTAACTATTGTGCATGCTCTTCTTTTCTTCGTAATGTACCTGCTGAATATTAATTTAGATGTAATATGTTGAGCCGTCTAACTATGCTAAACTGAAAACTGTTTAGTTGTTAATTGAACAAAGTCTCACGAATGTCCCGTTTGACATGGGtaaagcatttcaaaataatgaaatgaaagggCAATATAACAAATTTTGACATGACAGTGGCTGTGCCGTTAAGTGGTgtactaaaaagaaaaactattgaTGTAATTTGAtatgtaactttattttttcttgaattactatttatatatatatatatatatatatatattttgttttacatcaaATAAAGTCACCTCAAAATATATGATTTCTGGTGCTTTATTCTGCACTCACATTAGATTTAGCCTCAATAACAGAATCCCTCTTAAAGGATGTAATTTTGTATTGTTAAATTTAGTCAAGTTTATATTTACGATATTATTACCAGTAACCTATGAATGAAACTTGTTAGTATTTTTTGCAGGTcgaacatttattaatgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227876 lncRNA downstream 20467 841719 ~ 845010 (-) True G153893
TU227900 lncRNA downstream 89427 770513 ~ 776050 (-) True G153911
TU227643 lncRNA downstream 182366 679034 ~ 683111 (-) True G153760
TU227638 lncRNA downstream 280895 575924 ~ 584582 (-) False G153757
TU227919 lncRNA upstream 11775 878522 ~ 882184 (-) True vgll4a
TU227875 lncRNA upstream 31433 898180 ~ 899766 (-) False G153893
XR_006247797.1 lncRNA upstream 93527 960274 ~ 963577 (-) True LOC122328476
TU227992 lncRNA upstream 338732 1205479 ~ 1206158 (-) False G153966
TU227995 lncRNA upstream 338732 1205479 ~ 1206602 (-) True G153966
XM_043224278.1 mRNA downstream 30896 808924 ~ 834581 (-) True tnnc1a
XM_043224279.1 mRNA downstream 49323 808924 ~ 816154 (-) False tnnc1a
XM_043224276.1 mRNA downstream 79598 780028 ~ 785879 (-) False ndnl2
XM_043225342.1 mRNA downstream 554900 308363 ~ 310577 (-) True LOC122329137
XM_043225341.1 mRNA downstream 599445 258605 ~ 266032 (-) True LOC122329136
XM_043225136.1 mRNA upstream 16445 883192 ~ 895323 (-) False raf1a
XM_043225137.1 mRNA upstream 16445 883192 ~ 895323 (-) False raf1a
XM_043225134.1 mRNA upstream 16445 883192 ~ 895323 (-) False raf1a
XM_043225135.1 mRNA upstream 16445 883192 ~ 895323 (-) False raf1a
XM_043225133.1 mRNA upstream 16445 883192 ~ 895323 (-) True raf1a
XR_006247804.1 other downstream 79598 779085 ~ 785879 (-) True ndnl2
unassigned_transcript_2578 other upstream 153025 1019772 ~ 1019843 (-) True trnam-cau_118
XR_006247825.1 other upstream 189265 1056012 ~ 1064689 (-) False l3mbtl1
TU228038 other upstream 640951 1507698 ~ 1512291 (-) True smim29
TU228039 other upstream 641063 1507810 ~ 1512291 (-) False smim29
TU228042 other upstream 641063 1507810 ~ 1512329 (-) False smim29

Expression Profile