RNA id: TU228099


Basic Information

Item Value
RNA id TU228099
length 1190
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G154040
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1644461 ~ 1645807 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaacaattattttttttgttaattcatTGTACAATACATTTACGATGTGATTAAAAAGTGTTACCGGGTGAATGGCACAAAGATTTCatgggtcatatttcaccccgCAATCCAAAGAAATGGGATATTTTACATAGAGAAAAATAAGATTCTCTACAGAGATGCAGTGgcgaaactaaaataaaattaaaaagaggaAAGCTACATTCGGAACAACCAGTACTGCTACAGTGTATGTTTACAGTGGTAGTTCTTTTCACTTTTAGGTTATGAGAATTAGaactttttctttatgcaaaatttttttgcttttatttatttatttattatggggtaaaaaaaatgacttggaCGCGTTTTTGTGACATTCACCCTAAGTGGCCTGATTTTTATTCTTCCCTGAAAATAACACTACTTACGATTTtcccatgttttgtttttctgcagctactactattgttttgttttgttttctgtgcctGTACCAGCAGAACAAAGTCAGTATAGCATTCTGGTTACATGTTCTTAATTTCAGAGACCTTTCAACCTGCTCCCCTGCTGCCTTAGGTAACCTTTCCAATCACCTAAAGGCTGCACTAAATGCAGGACTCCGTGCTTAATGTCTGTACGCAGCATAAAGCGAGGgccaaaaaaaatctgtcaggGAAACAGAAACTAGCACAAGACATAAAGATGGCATGTTCTTACGAAGTGACGTCAGTATGTGTTTTTGATTTAGTGAAACGAGTGTTATGGATGCGTTCagtcccctctctctctctcttctcaccTTTTGTACTGAACAGCAGCCAGGAATAATTTGATTGGGTTTTACACTCGAAAGACAGCAATCAAACCTGCGATGTGCCAAACTCCCACAGGCTGTGAAGACAGAAGCGATCCCTACTGCTCATCCGCACACTAACTGAGCCATTTGGAAGCGTTTTAACCCTGAGTGCTGGATAACCTGCGTGTGTCTTTAACACACCTGTCAGTCCTCACCGTAAGCTGGGTTTGTGTGATGATTTTACTAGAGATGAACTGATGAATGAATTGACCCTGAAATTCCCgctacatacatacacacacacacacacacactctgctccTCGTTTCCCTCTGTCCATGAAGCATTATTCACATCTGCAGAGGTCTGATCAATGTCTGGCAAACAAGTTTTTTCTTCAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228093 lncRNA downstream 5215 1639117 ~ 1639339 (-) True G154037
XR_006247801.1 lncRNA downstream 20283 1623426 ~ 1624271 (-) True LOC122328490
XR_006247793.1 lncRNA downstream 21430 1621679 ~ 1623124 (-) True LOC122328433
XR_006247806.1 lncRNA downstream 24005 1620024 ~ 1620549 (-) True LOC122328550
XR_006247807.1 lncRNA downstream 27077 1616486 ~ 1617477 (-) True LOC122328558
TU228112 lncRNA upstream 48432 1694175 ~ 1694762 (-) True G154051
TU228113 lncRNA upstream 49032 1694775 ~ 1695134 (-) True G154052
TU228114 lncRNA upstream 50732 1696475 ~ 1696795 (-) True G154053
TU228115 lncRNA upstream 51660 1697403 ~ 1697696 (-) True G154054
TU228117 lncRNA upstream 60045 1705788 ~ 1706059 (-) True G154056
XM_043225362.1 mRNA downstream 25543 1617587 ~ 1619011 (-) True LOC122329162
XM_043225361.1 mRNA downstream 31548 1610269 ~ 1613006 (-) True LOC122329161
XM_043225360.1 mRNA downstream 35923 1606277 ~ 1608631 (-) True LOC122329159
XM_043225359.1 mRNA downstream 86567 1554262 ~ 1557987 (-) True LOC122329158
XM_043225564.1 mRNA downstream 132261 1507974 ~ 1512293 (-) False smim29
XM_043225332.1 mRNA upstream 244 1645987 ~ 1651285 (-) False spata2
XM_043225334.1 mRNA upstream 244 1645987 ~ 1651285 (-) False spata2
XM_043225330.1 mRNA upstream 244 1645987 ~ 1651285 (-) True spata2
XM_043225335.1 mRNA upstream 244 1645987 ~ 1651112 (-) False spata2
XM_043225331.1 mRNA upstream 244 1645987 ~ 1651110 (-) False spata2
TU228042 other downstream 132225 1507810 ~ 1512329 (-) False smim29
TU228038 other downstream 132263 1507698 ~ 1512291 (-) True smim29
TU228039 other downstream 132263 1507810 ~ 1512291 (-) False smim29
TU228037 other downstream 132263 1507885 ~ 1512291 (-) False smim29
TU228040 other downstream 132263 1507885 ~ 1512291 (-) False smim29
XR_006247837.1 other upstream 456967 2102710 ~ 2116883 (-) False LOC122328833
XR_006247839.1 other upstream 1125664 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 1141553 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 1279305 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 1279786 2925529 ~ 2951628 (-) True G154445

Expression Profile