RNA id: TU228138


Basic Information

Item Value
RNA id TU228138
length 451
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G154077
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1808555 ~ 1809005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGACATTTAGTTTAGGGACCAACTCTCTCTATTAATtaatagcatgcatattactagcatattgactgtttattacTACTTACAAAGCAAATTTTCTGCGTGACCGTATTGTTCTACTCGATACCTAACAACTACCACACTGACTTATACTGAAACAAAAGTGGGAGTTAATAGTTTGTCCTAAACTAAAATGCGACTGATAATTCTGTAACGCTTAAGAAAAGAGATCACTTATTCAATATTAACTGCAACTTTTCCCTCAACAAACCCCTAGTTCAGTGCTTATAGTCAGTGGTTATTGGGTAGGATTGGAAATGTagaaaaagcattaatatgtgcttaattactagtAATAAATGGCTGATATTCTAGAAATACGCTAATAAACAACTGTTacaggtcatttttatttattcaaatccCTTTCTCCATGTTTTTGACATTAACTCG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228125 lncRNA downstream 92584 1715243 ~ 1715971 (-) True G154064
TU228122 lncRNA downstream 96513 1711732 ~ 1712042 (-) True G154061
TU228119 lncRNA downstream 101100 1707139 ~ 1707455 (-) True G154058
TU228118 lncRNA downstream 101960 1706275 ~ 1706595 (-) True G154057
TU228117 lncRNA downstream 102496 1705788 ~ 1706059 (-) True G154056
TU228319 lncRNA upstream 237318 2046323 ~ 2046544 (-) True G154188
TU228325 lncRNA upstream 268559 2077564 ~ 2079496 (-) True G154194
TU228327 lncRNA upstream 283743 2092748 ~ 2095915 (-) True G154195
TU228334 lncRNA upstream 287779 2096784 ~ 2097008 (-) True G154200
XR_006247848.1 lncRNA upstream 290249 2099254 ~ 2102158 (-) False LOC122328884
XM_043225332.1 mRNA downstream 157270 1645987 ~ 1651285 (-) False spata2
XM_043225334.1 mRNA downstream 157270 1645987 ~ 1651285 (-) False spata2
XM_043225330.1 mRNA downstream 157270 1645987 ~ 1651285 (-) True spata2
XM_043225335.1 mRNA downstream 157443 1645987 ~ 1651112 (-) False spata2
XM_043225331.1 mRNA downstream 157445 1645987 ~ 1651110 (-) False spata2
XM_043225328.1 mRNA upstream 114182 1923187 ~ 1934838 (-) True dhx35
XM_043225481.1 mRNA upstream 127119 1936124 ~ 1939390 (-) True rab5if
XM_043224810.1 mRNA upstream 143145 1952150 ~ 1980965 (-) False plcg1
XM_043224809.1 mRNA upstream 143145 1952150 ~ 1980965 (-) True plcg1
XM_043224808.1 mRNA upstream 143145 1952150 ~ 1980963 (-) False plcg1
TU228042 other downstream 296226 1507810 ~ 1512329 (-) False smim29
TU228038 other downstream 296264 1507698 ~ 1512291 (-) True smim29
TU228039 other downstream 296264 1507810 ~ 1512291 (-) False smim29
TU228037 other downstream 296264 1507885 ~ 1512291 (-) False smim29
TU228040 other downstream 296264 1507885 ~ 1512291 (-) False smim29
XR_006247837.1 other upstream 293705 2102710 ~ 2116883 (-) False LOC122328833
XR_006247839.1 other upstream 962402 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 978291 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 1116043 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 1116524 2925529 ~ 2951628 (-) True G154445

Expression Profile