RNA id: TU228407


Basic Information

Item Value
RNA id TU228407
length 2162
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G154247
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2301610 ~ 2304408 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttagtgttttatgtaCATGAATATTGGCAGAGAAAATCTGTACATGTGACACAGAGATGAGATACTTTTACACACACCAGATTCACAAACTGagattatacacacacaaactgacagTGGGTTCAACAACGCTGACTTTCATAtagatttaaaacacatttttatcacTAATAACTGTtgtcaataacaaaaaaaataacagttaaaaaaataaaacattaagaagtatgaaataatttaaaaagtcttcTACACCGTGTTTTTAATACAGGGCAGGAGAGCGGAGAGAAGGAGTCATGGAGCTACCTCTGTGATGGCTGGCGTAAAAAccaaaacgaacaaacaaatcGAACGTAGACATAAGGCAGACAAATGGTGCATGCAGTGGCTAAAAGAGAACTGCAACTCCTCCAAACTCCCATTTCCACGGCATTGAGGATGCAGTACAGGGACTCTTTGCGTAGCAACAGCGATGGCACCCCCTGAGAACAAACCTTCAGGTGCCTAAGGTCGCCTGAGAGCGCCAGACTCGACTCGACTCGgtaatgtaaacataaatacagAGGTTGATATCTCACTCTACAGGCAGTTCGGTCACCGCGACACATGCAGCGTTAGCATTAGCATTGTGCGCAAGTAGTCAGTCTGCAAAACTCTCCTTAGTAGAATATCACTTCGAGTTAaataaaacttctttttttctcattatatatataatatatttacttcTGTGCAGAGTCTGTGCTTCGGAgtttttttaacagtacttCCTTGTTTTCACCAGTTTGCTCTGGTACTTGACTGAGTGGCCGCTGTGTCCCACCACATAAACATCCAGGAGGTAGCTCTTTCCTGCCTCGAGGCCCATTATGGTCTCGGTAGTGACGGCCTTTTGCAGGTTGGCGCTGTGGAAGTACTTGCAAAGCACTTTCTCTGACTTGCGACGGCTCTCTGGTCCAGCGCACTGGTTCTGCTCTCTGCGCCGATGCTCTTCGCCATAGCTTTCAGAAACTTCACGTCTGTAAACACAGTATTTGTTGCGCTCCTGTGTGCCAAGCCAAGCCACTGTGACGGAGGAACAGGTACGCAACTTATCGAAAGCCTTGATGCGGGTATCCTCGGGTAGGGCAGGGAAAGGTTGCTTGCCTCCGGCACGTGTGCTGGCGAGTACCTTCAAGGTGGAGGCACCCTTGCGGGATCCCCGCAGACGAATCAGGTACTTGGCTTTGGGCTTCCCTCGGAGCTGGAACTGACGGACACCCTCCACATTCTGAGAGAGAACAAGCTTCCCGTCACGCCGCACCTGAACTTGCACTGCGTCCAGACAGGCATGGACAAAGAGTGTGACGCGCTGGTGAGAGGAGACCGGCGCAAAGCGAAGGAATTTGCTGCCTTTCCTCTTAATGAAGACGTCGGTTACTTTCCCATCCTTGAGCTCCACAGTCTTCTGCTTGGCTTCTTCCTTGGTGCGGGCAAATGTGCCCACGTACGCAGTACTCATGTTGGTGCCAGTGTTGACGGCAAACACATCAAAGTAATACTGCGTGTCTGGCTTTAGATCTGTCACGGTAAAAATATTCTTGTTGCCTATGCAGATCTTCTGTATGTCTGCCACTTTGGGCTTGGGGATATATGTGCGACTCATCTTGTTGCTCAGAGCTCTGTTGGTGGTGAGGGAACGATCCTTGAAATCATTCTCAGATGGGACAAAACCAAAATGAGCAAAGTCAAAGGGGCTGAAATCCCGACCGGGTTTTGGAGCAATCATGAAGGCATCATCCAAGCTCATCTTGGCCTCGGCTGCACATAAGCTTTTGAAGTTGTGCTCCTTGTTAATAACCACACAGTACTGGATTGGCTGGCCCATGATGGAGCCAGTAGGAGTGGGTTTCCAGGCCAGCGTGACAGTAGTACGACCCAGTGCAGTAACATCAACCCTGGGGTCATAAGGCAGCTCCGGGTATGGCTGATCGGACTCAGGAGTTGTGGTAGAGTACATCTTGAAGTTGCTGTCCTTTTCGGTGGAGATGATTTCCAGCTGGTACAAGCCCGAAGGGGAGCTTGTGGAGATGAACGACTCAACGTCATTTCCTTTGTAGGTAAAGAGTTCGGTCCCCTCATTAGCCGTGACCTGCTGTTTCTGCTGCTCTAGAGGTTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228405 lncRNA downstream 1291 2300255 ~ 2300566 (-) True G154246
TU228403 lncRNA downstream 13354 2288267 ~ 2288503 (-) True G154245
XR_006247848.1 lncRNA downstream 199699 2099254 ~ 2102158 (-) False LOC122328884
XR_006247849.1 lncRNA downstream 199728 2101524 ~ 2102129 (-) True LOC122328884
TU228334 lncRNA downstream 204849 2096784 ~ 2097008 (-) True G154200
TU228445 lncRNA upstream 175867 2479885 ~ 2480254 (-) True G154277
TU228446 lncRNA upstream 176589 2480607 ~ 2480873 (-) True G154278
TU228461 lncRNA upstream 184727 2488745 ~ 2583087 (-) True G154288
TU228518 lncRNA upstream 344136 2648154 ~ 2656582 (-) True G154336
TU228523 lncRNA upstream 355532 2659550 ~ 2659861 (-) True G154338
XM_043224899.1 mRNA downstream 32950 2245740 ~ 2268907 (-) False cpeb2
XM_043224898.1 mRNA downstream 32950 2245740 ~ 2268907 (-) False cpeb2
XM_043224897.1 mRNA downstream 32950 2245740 ~ 2268907 (-) False cpeb2
XM_043224896.1 mRNA downstream 32950 2245740 ~ 2268907 (-) True cpeb2
XM_043224930.1 mRNA downstream 61206 2234831 ~ 2240651 (-) True LOC122328872
XM_043224856.1 mRNA upstream 160168 2464186 ~ 2479525 (-) True LOC122328840
XM_043224855.1 mRNA upstream 160168 2464186 ~ 2479521 (-) False LOC122328840
XM_043224929.1 mRNA upstream 397797 2701815 ~ 2714305 (-) True epm2a
XM_043224880.1 mRNA upstream 410479 2714497 ~ 2720029 (-) True fbxo30b
XM_043224926.1 mRNA upstream 419823 2723841 ~ 2726856 (-) True LOC122328868
XR_006247837.1 other downstream 184974 2102710 ~ 2116883 (-) False LOC122328833
TU228042 other downstream 789528 1507810 ~ 1512329 (-) False smim29
XR_006247839.1 other upstream 467389 2771407 ~ 2782853 (-) False LOC122328838
XR_006247842.1 other upstream 483278 2787296 ~ 2798533 (-) True LOC122328849
TU228731 other upstream 621030 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 621511 2925529 ~ 2951628 (-) True G154445
TU228726 other upstream 621511 2925529 ~ 2942569 (-) False G154445

Expression Profile