RNA id: TU228642


Basic Information

Item Value
RNA id TU228642
length 1460
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G154412
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2867471 ~ 2868951 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGGAGATCTTGTTGTGATCGAGGGCCTGGATGCCGCGCCGCACGCCGCCGTACACGTTACTGCGCACCAGCACATCCTCCGGGAAGATGAACTTAATGAGGTATCGGGCGATGAGTTCAGGACGCGTTCGCAGATGTGCTGCAGACAAGGCAAACTCGGGAACCTTCACGTCCCGATGAGGGGGGCCAAGATACACTGAAAACGAGGAAACTAAGACTTAATAACAAGCATGCGGTTTGTTCAGCAAACGAGATTCGAAATTCATGACCTCTTGACCTCCGAGCCCAGTATGATGGGAAGTACGTTTCATCGACGGACGGCACTGACCGTTGTTTGAGTCCCAGTCTGTGGGCATGCTGTGATCATCATCTGTGATGTGGCTCAGCAGTGTTTCCTGCTCCGTGTCGCTGTCGGACAGTTCGACGTCAATCTCTGCCGCTGCCGTAGGGGCTGATTCTGTCCCGTTCTCAAGGTTTGCTCTTTCCTTTACTTTCAGCTGTAAAGGATTAATAGTCCTGAGCGATTTATGGCATCTGAAAAATAACTCAAATGTGCAGTCGTCGTGTAAAGAATGAAGAAAATGCGAAAAAAACGACTTTTTGTAAACAGGATGAATAATGGCGTACTACACACTGCTGTCGGTTCCTGAAATGTCACGTACCTAAACACAGATATAATCAACACAAACTTACTTTGTAGAGAACACTTTTGCGtcaaaattgataataaatataaccGAAGTAGCGATTAAGCACTCCGGAGGCAAAGTGAAGAGCTAAGCACGGCACGGGGCATCAGAGCAACCGCAACAATGAGTCATGAAAGCACTTTTAGGATGACTGTAactgaaaacataaatacaacctctattaataatataatggcTTACCACGATGGGCCAACAGGTGGAGATTTTATCAAATTGATGTGTCGTGTGAGGTGAAAATGGCACAGTGTGTCAGGCTTTTATCCAATTATTGGCATGATCCAAGGAATCTACCAAAACCTGTTTCAGCACAATATGGTTCAATGCGACCATACGGTTAAAAAAGCAGAacggaagaagaagaaaaaagtaccGAAATAATGCCAGTGGATACAATAGGTGACATCACACAACTTCGTGCCTGgctcttaataataatattaataatgaaacataAGTATGGGCTCCAATCAATGGGGTCCATGCATTTGGGGGAAAGAGATGTAAATTGGAAGTGCTGCAGATTAAACTGGTTTTAATaagaacaaagcaaacaaaagatcCGAGCGGTGGGAAGTTGTTATGAGAGTGTGGGGGTTGTGATGAACTCAAAAGTTAAAAAGCTGTTACTTTTAATCTTACTTTCCGCGTCTTGTCCATGAAGCGATAGTAGCGGGCCGTTGAGTTGATTACAGACAGACACATTTTCCAGTCTTTGCCTTTCTCACGAAGGTCAGATTTTGGATATCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228632 lncRNA downstream 7289 2856588 ~ 2860182 (-) True G154406
TU228633 lncRNA downstream 14241 2852619 ~ 2853230 (-) True G154407
TU228631 lncRNA downstream 15947 2851314 ~ 2851524 (-) True G154405
TU228630 lncRNA downstream 19852 2847358 ~ 2847619 (-) True G154404
TU228613 lncRNA downstream 44399 2821320 ~ 2823072 (-) True G154391
TU228643 lncRNA upstream 5521 2874472 ~ 2874756 (-) False si:zfos-905g2.1
TU228650 lncRNA upstream 31620 2900571 ~ 2900823 (-) True G154420
TU228719 lncRNA upstream 55091 2924042 ~ 2938624 (-) True G154442
TU228724 lncRNA upstream 56059 2925010 ~ 2932237 (-) True G154444
TU228722 lncRNA upstream 56253 2925204 ~ 2950658 (-) False G154443
XM_043224852.1 mRNA downstream 28424 2769482 ~ 2839047 (-) False LOC122328838
XM_043224851.1 mRNA downstream 28430 2769482 ~ 2839041 (-) False LOC122328838
XM_043224885.1 mRNA downstream 68938 2787296 ~ 2798533 (-) False LOC122328849
XM_043224849.1 mRNA downstream 84618 2769482 ~ 2782853 (-) True LOC122328838
XM_043224850.1 mRNA downstream 84833 2769482 ~ 2782638 (-) False LOC122328838
XM_043224920.1 mRNA upstream 667 2869618 ~ 2874758 (-) True si:zfos-905g2.1
XM_043224921.1 mRNA upstream 667 2869618 ~ 2874754 (-) False si:zfos-905g2.1
XM_043224864.1 mRNA upstream 145665 3014616 ~ 3062072 (-) False frmd4bb
XM_043224867.1 mRNA upstream 145665 3014616 ~ 3057384 (-) False frmd4bb
XM_043224866.1 mRNA upstream 145665 3014616 ~ 3057384 (-) False frmd4bb
XR_006247842.1 other downstream 68938 2787296 ~ 2798533 (-) True LOC122328849
XR_006247839.1 other downstream 84618 2771407 ~ 2782853 (-) False LOC122328838
XR_006247837.1 other downstream 750588 2102710 ~ 2116883 (-) False LOC122328833
TU228040 other downstream 1355180 1507885 ~ 1512291 (-) False smim29
TU228731 other upstream 56097 2925048 ~ 2957272 (-) True G154446
TU228725 other upstream 56578 2925529 ~ 2951628 (-) True G154445
TU228726 other upstream 56578 2925529 ~ 2942569 (-) False G154445
TU228728 other upstream 73287 2942238 ~ 2951628 (-) False G154445
XR_006247838.1 other upstream 567828 3436779 ~ 3445964 (-) False LOC122328836

Expression Profile