RNA id: TU228840



Basic Information


Item Value
RNA id TU228840
length 1009
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G154520
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2996765 ~ 2997964 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aactcatcgaCATCTTGGATTGCCTGAGGACGAGCACACATTCagccaatttttatttttttttggctgacCTACTCCTTTAAATTCTGTATTTAATTCCTTAAATGTAGCATGATATGATATGCATCCAAACTATTACGCCAACTGCCACGCAGATTTCTATTGCCAAGTAAATGAAATTCGATTTTTGTTTCGTTATAACAGCATGCCACAGACGAACCGTCTGCATTCATAAATCAAGAAATAACATGAAGACAAACCTCGTTAACGGTTGCATTTGGCGGGAGCATTCTCAGCATGACAATGTTGCTGGGTTTTTGGACCTGCTCCGTATCAGACCTGTAGTCCTGGTCGCGGGGTTCGGCCTCCTCCTGGCACATTTCCAGAGCGGGATGAAACCTTCCGTCTCTTATTTTGTCCCTAGCTAGTTGAGATTCATCGGGAAACCTTGTTTGTGCGCGTGTCTGACGTGTTTGTCTTCCTCAGCTCTCCATTCTGCACCGTATTCGCCCTGAGAGTCGTGCCGCCCTCTAACTCTGCCCCAGGCGTCGTCCTCGTTTTCTTCACCTTCATCCGGGGTCCCTTCATCCAGATAGACCTTCTGTCCTGATCTATACGTCCTGTGCGCACTCGTCTCTGGCTCAAACTCATAATCCTTATCGTCTTGCTGGAATCCCGAGTGGATATTCTCATTGGGGGGACTTTGGAGGAGGCTTTTTCCAAGTGGGCCGTTTTCGGATCCGTGGTTTCCCTTTTGTCTGAATCCGGGTCGGTTAGTCGAAAAGTTACCCGAGGCAAAGTCTCTCATGCCTTCAAAACTACTATCGGGCTCTTGCGGTCTTACGTTTGTTAAACTGCTATTCGGTCTATTTTCTTGCCCGTAACCGCGATAGTCCATGTCCCTATAGTCATGATCGTCAGAATCTTTCCTATAGCGGCCCATCCGATCTCCACGACCGCCCCTACAAAAGACACAGACAATTAATAAACGGTTCGCTCAATTCACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU228727 lncRNA downstream 45677 2925305 ~ 2951088 (-) False G154445
TU228722 lncRNA downstream 46107 2925204 ~ 2950658 (-) False G154443
TU228720 lncRNA downstream 46107 2941404 ~ 2950658 (-) True G154443
TU228719 lncRNA downstream 58141 2924042 ~ 2938624 (-) True G154442
TU228714 lncRNA downstream 58141 2930783 ~ 2938624 (-) False G154442
TU228839 lncRNA upstream 8519 3006483 ~ 3009478 (-) True G154519
TU228837 lncRNA upstream 9957 3007921 ~ 3009478 (-) False G154519
TU228838 lncRNA upstream 9957 3007921 ~ 3009478 (-) False G154519
TU228845 lncRNA upstream 13455 3011419 ~ 3013181 (-) True G154525
TU228997 lncRNA upstream 504311 3502275 ~ 3518117 (-) False tspan2b
XM_043224920.1 mRNA downstream 122007 2869618 ~ 2874758 (-) True si:zfos-905g2.1
XM_043224921.1 mRNA downstream 122011 2869618 ~ 2874754 (-) False si:zfos-905g2.1
XM_043224851.1 mRNA downstream 157724 2769482 ~ 2839041 (-) False LOC122328838
XM_043224864.1 mRNA upstream 16652 3014616 ~ 3062072 (-) False frmd4bb
XM_043224867.1 mRNA upstream 16652 3014616 ~ 3057384 (-) False frmd4bb
XM_043224866.1 mRNA upstream 16652 3014616 ~ 3057384 (-) False frmd4bb
XM_043224865.1 mRNA upstream 16652 3014616 ~ 3057384 (-) False frmd4bb
XM_043224863.1 mRNA upstream 16652 3014616 ~ 3057383 (-) True frmd4bb
TU228731 other downstream 39493 2925048 ~ 2957272 (-) True G154446
TU228725 other downstream 45137 2925529 ~ 2951628 (-) True G154445
TU228728 other downstream 45137 2942238 ~ 2951628 (-) False G154445
TU228726 other downstream 54196 2925529 ~ 2942569 (-) False G154445
XR_006247842.1 other downstream 198232 2787296 ~ 2798533 (-) True LOC122328849
XR_006247838.1 other upstream 438815 3436779 ~ 3445964 (-) False LOC122328836
XR_006247897.1 other upstream 897002 3894966 ~ 3905892 (-) False lad1
XR_006247892.1 other upstream 1175950 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other upstream 1175950 4173914 ~ 4194996 (-) False LOC122329268
TU229703 other upstream 1833854 4831818 ~ 4834520 (-) False LOC122329181

Expression Profile