RNA id: TU228997


Basic Information

Item Value
RNA id TU228997
length 3327
lncRNA type sense_over
GC content 0.42
exon number 3
gene id tspan2b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3502265 ~ 3518142 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGACAGAGCTCGTGCGGCGCGACAGCATCTCCGCCTTTCACGCCGCGAGCCGGACCGATCAGAAAGAAGACCCCGTCAGATCACACGTACGCCATGGGGAAGGTCGAAGGCGGGATGAAGTGCGTGAAATATCTCCTCTTCATGTTCAACTTTATATTCTGGttgATCGGCTCGCTGGTTCTGGCTGTAGGCCTCTGGCTCAGGCTTGATCCAAATACTGTGTCTCTTCTAGGAAAAGGCGGACCTGATACCTTCTTTATTGattattggcatgatcttcaGTATGGTCCTGTGCTGTGCCATCCGGAACAGCAGGGAGGTGATCTAACGCAGTCTTCCTCACCTGAACATGACCTTTCACCTTTGACACTTAACTTTTGCTGGACTTGCATATACAACTAGAACATTCCAACCTAGTTCAAGGTATTCTTCTGCCACTCAGGAACCGAGAACAAACTCCGCTTTCATAATCCTGTACACCTCAACCAACCAATGGTTTAGTCCGGTCCTAGTTGTTTAAACTCAGATTGCTGGAtcgtctttatttttaatgcctGCTGGTTGGGTGCAGAGCTGGATCTTCCAATTGCGACAAACACGAGTtcgttttaatataatttagatttCGACTTCTGGTGCACACTGATCTGCTCTTTCAGAGAGTTTGCACATTTATGTATTGATGCTATTCCAGGCTGTTGCTGCGTTGCTTCGCATGCCAgataaaaatattgtgtaatgTGATGCCACTGGTTCTGTGGCAAACCCGCAGCCGCTGGGAATGGCGGAAAGAGGACCCACGGATGCTTTTCGCTTTACGTTTGTACACAAACAAGGTGGTCTTCTACGTCACCGacacatgcaaacaaatgcTTACCGAAAGATGCACACATGCGCACAAAACCCACATGTTGGTGATCTTCAGAAGAACCTTTGTGTCCATACCATCCAGTGAGccctcttaaagggacagctcacccaaaaatcatCTTTCTCacccatgttgttccaatcctgactttataactcacaattgcgagtttatatgaagcaatactgagaaaaaagtcagaattgccgGTTTACAGCGGGTCTTGCGATTCTGACTTCATTTCTCACAGTTGCGAGTTTGTTTCGCAATTCAGAGTAAGGATTGCACGTTTtgagaaaaaagtcaaacttgTGAAATGGAAGGCATAATTGTGATATTgtgcatttactttattttattctggctttaaatacaaaagttattttgaagaatgttggtaaccaaacattGGCTTCCACAGTATGgagaaaaatactatggaagtcaatgcaGGTCAATGGTGTCAACTATAAGGTTACCGACATTCCTCGAAATGCAGTCACAACTCGAGGGTGATTTTCAgctgaactgtccctttaagtctTGCTTGCCCTCCGAATCCCTCCACGCAGTTTCCACTTCAGGAGAGGCACACTAACACATATTCGCATATGCATTTGAACTCACGTCAACACCGATGATCGGGTTTCTGTTATGCAATAACCTGGCTCAACTGAAGCCTCCACTGATAACGGTACAGCCTGGTATTCTCTGGCACGATGGAGCCAAATCTTCTCATTCTCAAGCTGGATTTTATGGTGTAGAGTTGCCTGGTTATTTTACACACGCAGCTAAGTAAAGACCCTGAAGATCCACTGACACTGTCTTGTGCCTTCTACCGTCTATAATTGGTTGCATCCAACCATCTGCGCTGTGAATATGAAACGGATCAGACATGACCGACATCTGAATCACTTGCTTAATTCATTCAACAAACAAGGATGGTTCAAGCAGTGTCCTTAAGTGGAGTTATTAGAAGAAGAACTAGTTTCGCTTACTTTTAAGgcgtccttgttacagtgtaattgtacatttaaGTACTTTTAATATTAACGAACTGCAtgtttgggtaggtttaggctTACTTGCAtgaaatgatgcataattattatttttttattataatgggAAGTACGTGTAACATGTAACAAGAACAACTTAAAGTAAAGTGTGACTAAAGAGTTGTTATTATATCTATATAAGATGCATGAGTAAGTTATAAATGCATTGGTGGACTAATTGGGAGACTGTCCATGTGAATACCTTTGTACTCACGTTCATTTGCTTCGTTTTTTTAGTTGATTTAGCGATTTTGTCGGATGGGACGGTGAAGTAACGAGAGAGGGAAAAGGGATCACTCAAAGCACATccgtgccattttttttttgaggtttaAATTGGATTTAGTTTCTCCGATTTTCAATGCGGTCTGAACCCCACATTTTTAACCTAAAATTTTGGtactggacaaaaaaaaaagtcttcaacTTCAAGTGATCGAATCCAGGTTTCTGAAATGAACACTGAAGTATTTAATCGCATATAGAAACTGGCTTAGTCCAGATGTTCTCGACACATTGtcaaaaatgtcttgttttatcAAAGCATCGATTGCATGTCAAAGAGAAGTCACTTACAAGccaagcagctttctgtttgtCTCACCCAAACTTGAAATGACCGCATTTCTCCTGTAAAATGTTCCTAAGCGACGGTAAATGTGAGCGTATCTTCAGTCTTACGTTCTGTGTACATATCTGTGAGAGTTTCACGAGTTGTCATAGTAGTTGTAGCGATCGTGATCATCTGTCTTGTGCGGTTAATGTGTATAGAGGCAGTTTTGCCCAGTGTACAGCCGTTTTTGTTTCACATCATGCATTTGAAGGtgcctttgtttttattcaaccCGAAAAAACAACGTAGTATTCGGTTGAACGTTGTCGTTGTTTTAAGAGAAGGGATCGGAAAAGGGACgaaatctctttttttgttatttataatagGGCAGCCGTTGGTTGGTCAGATGTATTTCTGCTGGTGCGTCACTGCTGAAGTTCCTCAAGATGAAATGGCATTAGAGTAGCGATTAGGATACGTCGTAGTCGACGCTAACGGAGTGTAACACGTGAAACAAGTGTTCCGTTCGCATTCAATGTTCAAGTAGATCCGTCCTCGTGCCCAAAAGCAACCCTGTTCAGGCTGTACGATAACTAGTACGGAGCATGTAGCGCGGCTTTCGAGTAGAGGCTCTGTCGTAAACTATGAGTGTGTTATTCCTACACTTTGTGTAAGCAatgtcaagattttttttttgtactgtaaacAGAACACTGCAGCCTTTCGATGTTAGTGCTCacaatttgtgtgttttaatttatttttctggaGAGCAAGTTCAAAACAGCATTCGGGTTTCTCAGGAACACTGCAGCACGAGAACAAATAAACTTGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228845 lncRNA downstream 489094 3011419 ~ 3013181 (-) True G154525
TU228839 lncRNA downstream 492797 3006483 ~ 3009478 (-) True G154519
TU228837 lncRNA downstream 492797 3007921 ~ 3009478 (-) False G154519
TU228838 lncRNA downstream 492797 3007921 ~ 3009478 (-) False G154519
TU228840 lncRNA downstream 504311 2996765 ~ 2997964 (-) True G154520
TU229031 lncRNA upstream 114242 3632359 ~ 3633333 (-) True G154663
TU229039 lncRNA upstream 137169 3655286 ~ 3655596 (-) True G154671
TU229040 lncRNA upstream 138171 3656288 ~ 3656543 (-) True G154672
TU229056 lncRNA upstream 154562 3672679 ~ 3673581 (-) True G154684
TU229059 lncRNA upstream 174820 3692937 ~ 3693265 (-) True G154687
XM_043224731.1 mRNA downstream 28821 3447559 ~ 3473454 (-) False uhrf1bp1
XM_043224732.1 mRNA downstream 28821 3447559 ~ 3473454 (-) False uhrf1bp1
XM_043224730.1 mRNA downstream 28821 3447559 ~ 3473454 (-) False uhrf1bp1
XM_043224729.1 mRNA downstream 28821 3447559 ~ 3473454 (-) True uhrf1bp1
XM_043224848.1 mRNA downstream 56315 3436196 ~ 3445960 (-) False LOC122328836
XM_043224198.1 mRNA upstream 11416 3529533 ~ 3554513 (-) True ngfa
XM_043224437.1 mRNA upstream 156348 3674465 ~ 3681959 (-) True pnpla1
XM_043224432.1 mRNA upstream 163975 3682092 ~ 3688198 (-) True etv7
XM_043225547.1 mRNA upstream 183489 3701606 ~ 3770863 (-) True LOC122329314
XM_043224947.1 mRNA upstream 363903 3882020 ~ 3893676 (-) False tnnt2a
XR_006247838.1 other downstream 56311 3436779 ~ 3445964 (-) False LOC122328836
TU228731 other downstream 545003 2925048 ~ 2957272 (-) True G154446
TU228725 other downstream 550647 2925529 ~ 2951628 (-) True G154445
TU228728 other downstream 550647 2942238 ~ 2951628 (-) False G154445
TU228726 other downstream 559706 2925529 ~ 2942569 (-) False G154445
XR_006247897.1 other upstream 376849 3894966 ~ 3905892 (-) False lad1
XR_006247892.1 other upstream 655797 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other upstream 655797 4173914 ~ 4194996 (-) False LOC122329268
TU229703 other upstream 1313701 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 1936300 5454417 ~ 5455047 (-) True G155227

Expression Profile