RNA id: TU229116



Basic Information


Item Value
RNA id TU229116
length 560
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G154724
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3867282 ~ 3867841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACTGACTGGATGtacattcattaattcattcacacGTAGGCCTGTATAAAGCCTAGTTATCAAACCTTTGGTTCTCCTGAGAAACACTGGGCTCCGCGTTAGAAGGATGATCTGTTTTTCAGCGCTGTACTGAGTGAACTTTGCGTTCTCTCAAAGATAAACACTCCGTTAGTCCACCACAGAGTGAAAGTTTTGCCCCAGATCACTCCAAAccaaaaagctttgttcgtcttcggaTCACGGTTGAAGGTATTtaggatgaaaaccaggaggcttttGACTGACCCCTTGaccgtcaaggtccagaaaagtgaATAGTCTTATCtattatgaagctacgagaatagtttttgtatggaaattaaaaaataaatttttaaatacagttgttatttttgttttcttctcgtAGCTTACGGTTGAAGCACTGAAGACAGATGGACTATTCAGACGTCtgtcatacttttctggacctggaCAGTGTTTATTACCCGGcggtcaatgggacagtcacaaacctcccggttttcatcctaAATATCTTCAATTGCGATCCGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU229114 lncRNA downstream 8612 3855066 ~ 3858670 (-) True G154723
TU229108 lncRNA downstream 29149 3837662 ~ 3838133 (-) True G154720
TU229092 lncRNA downstream 40092 3826827 ~ 3827190 (-) True G154708
TU229083 lncRNA downstream 60381 3806543 ~ 3806901 (-) True G154703
TU229081 lncRNA downstream 68313 3797990 ~ 3798969 (-) False G154701
TU229192 lncRNA upstream 69510 3937351 ~ 3937638 (-) True G154763
TU229193 lncRNA upstream 70732 3938573 ~ 3939050 (-) True G154764
TU229216 lncRNA upstream 182449 4050290 ~ 4050580 (-) True G154783
TU229223 lncRNA upstream 195682 4063523 ~ 4064880 (-) True G154789
TU229221 lncRNA upstream 196124 4063965 ~ 4065529 (-) True G154787
XM_043225547.1 mRNA downstream 96419 3701606 ~ 3770863 (-) True LOC122329314
XM_043224432.1 mRNA downstream 179084 3682092 ~ 3688198 (-) True etv7
XM_043224437.1 mRNA downstream 185323 3674465 ~ 3681959 (-) True pnpla1
XM_043224198.1 mRNA downstream 312769 3529533 ~ 3554513 (-) True ngfa
XM_043225298.1 mRNA downstream 349140 3502265 ~ 3518142 (-) True tspan2b
XM_043224947.1 mRNA upstream 14179 3882020 ~ 3893676 (-) False tnnt2a
XM_043224946.1 mRNA upstream 14179 3882020 ~ 3893676 (-) True tnnt2a
XM_043225533.1 mRNA upstream 27125 3894966 ~ 3905892 (-) False lad1
XM_043225532.1 mRNA upstream 27125 3894966 ~ 3905892 (-) True lad1
XM_043225417.1 mRNA upstream 39421 3907262 ~ 3913491 (-) True tnni1a
XR_006247838.1 other downstream 421318 3436779 ~ 3445964 (-) False LOC122328836
TU228731 other downstream 910010 2925048 ~ 2957272 (-) True G154446
XR_006247897.1 other upstream 27125 3894966 ~ 3905892 (-) False lad1
XR_006247892.1 other upstream 306073 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other upstream 306073 4173914 ~ 4194996 (-) False LOC122329268
TU229703 other upstream 963977 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 1586576 5454417 ~ 5455047 (-) True G155227

Expression Profile