RNA id: TU229677


Basic Information

Item Value
RNA id TU229677
length 1611
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G155092
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4707665 ~ 4710337 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTcggtttaaattaatttattatgcaaGGTGTGGATATGAGTCAACGTCTTGAAGAACATCAATTATACAGCATAGCAGTCATTAAGCAAAAATATCAGACCGACCAATCGGAATCAAGTATTCCAGAACCTGTGCAATGACAacgcaattaaataaatagctaaataaatccTGTTGTAAGACAGAAGTCACAGTAGATACATTCACTAGGCCTTGACATTATCATGGCAGATCTCAGTGCTTCccaattaatataatattgtaggcattttaatatcaaacattaaaaagaagacgacttattttgtatattgcagtacaattatttttttttttggttaactgTTGCACACGATGAAGCAGTATTTTCATGACGAAGTAATTTCTTCAAGCTAGGTACTTTCTCAAAGTGCTCAGTggggtaaaaaaacaacaacgataaAACGGAGAGATATCAATGTGACATCCATAACAAGAGCGAGCGCAACGCCCATTGGCTTGAATTTCAGGCCAAACACCAACACTTCCTGTGGGCTAGTTTTGTTCTTGCGTGTCCCGTGCGTTCTCGACATCAAGCAGATGCCTGCCATATATGGTGAAGGCAGCTACAGACTCGCTGGACAGGTGCAAGATGCTGCACTTTTGTGGAtcggaaaaaagaaaagaaagaaagttattCTTACGGCGACATTATCTAGGTGGCATCTCTGTGTCTAAAAACAAATGGCCGCCGATGATGATACAGATCACATCTACATTTCACAAGAGCTGCTCGGTTTGATACACAGATAGAGAAACCCTCAACATCTTCAAATTTTTTCAGAAAacggtacaaaaaaaaataaaaaatacagaacgCAGTTGTGAAAGTGTAATTGTTAACAGCGTGCGGTTTGGTCAGCAGCCGTCTGCAGGTAAAgcgcgcgcgagagagagagaaagcaaagattaaaacaaagcaaCGCCCACACATTTTTTCCGATGAAGTGGTCCTTCAAAGAAATTCACTGTCTAAGAGTAGCAAGCGCTTTCAGTCTCGCTTTACTCTCTGAAACTTGACTGCTGCATAAAACGgtgtacaataataaaaaaaatgacacgcTGCTTGCCATGACGAGGCACACAAGCGCCAAAAATACTAAACGTCAGATTCCTAAAATGGCAACAAACACGTAAGGCGATGAATCAACTGCATGTACTTCAGAATCGAATGTTACACGCGACTGTACTGTAATATCATTAAATAActcgcattaaaaaaaaaacataaataaaaacgtcACATAAAACACTTCTGTTCTGGGAGTGccaaaaagtataaaaatattttataatgtacaaaTATCCGACGCCACGATGTGCCAGGCGTCAGCAGCTGGGCTCGTCCATGTCGTCATCGCTCCAGTCTGGGGGAGCGTCCGTGCCAAAATAGCGATCCCCAAAATTtcctggacTATGCCGGGGATGATGTGGAACAGGTCGTTGACCTTCTTGTCGACGGCGGTGGTGATGATTTTGACCTGAGGGAAGGCGTAGGCCACAGAATGGACGCCCATCTCAGCCATCAGCAGAGACACCAGCAGGATCTTATCCTCCTGAACGTCATgatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229643 lncRNA downstream 27386 4679983 ~ 4680279 (-) True G155085
TU229420 lncRNA downstream 157447 4546883 ~ 4550218 (-) True G154933
TU229356 lncRNA downstream 363798 4283769 ~ 4343867 (-) False G154895
TU229355 lncRNA downstream 422108 4283769 ~ 4285557 (-) True G154895
XR_006247789.1 lncRNA downstream 505525 4200644 ~ 4202140 (-) True LOC122328378
TU229678 lncRNA upstream 2352 4712689 ~ 4713082 (-) True G155093
TU229682 lncRNA upstream 17517 4727854 ~ 4731140 (-) True G155096
TU229707 lncRNA upstream 198581 4908918 ~ 4913987 (-) True G155112
TU229708 lncRNA upstream 198581 4908918 ~ 4943017 (-) False G155112
TU229766 lncRNA upstream 374805 5085142 ~ 5087946 (-) False G155153
XM_043225297.1 mRNA downstream 141391 4551029 ~ 4566274 (-) True prpf6
XM_043225493.1 mRNA downstream 161259 4540302 ~ 4546406 (-) False edem2
XM_043225492.1 mRNA downstream 161259 4540302 ~ 4546406 (-) True edem2
XM_043224117.1 mRNA downstream 177329 4521926 ~ 4530336 (-) True si:ch211-117c9.2
XM_043224118.1 mRNA downstream 185885 4517836 ~ 4521780 (-) True trim35-39
XM_043224062.1 mRNA upstream 101451 4811788 ~ 4815325 (-) True naa10
XM_043224153.1 mRNA upstream 105485 4815822 ~ 4827179 (-) False g6pd
XM_043224155.1 mRNA upstream 105485 4815822 ~ 4827119 (-) False g6pd
XM_043224156.1 mRNA upstream 105485 4815822 ~ 4827111 (-) True g6pd
XM_043225379.1 mRNA upstream 117141 4827478 ~ 4834305 (-) True LOC122329181
XR_006247892.1 other downstream 512667 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 512669 4173914 ~ 4194996 (-) False LOC122329268
XR_006247897.1 other downstream 801773 3894966 ~ 3905892 (-) False lad1
XR_006247838.1 other downstream 1261701 3436779 ~ 3445964 (-) False LOC122328836
TU228728 other downstream 1756037 2942238 ~ 2951628 (-) False G154445
TU229703 other upstream 121481 4831818 ~ 4834520 (-) False LOC122329181
TU229887 other upstream 744080 5454417 ~ 5455047 (-) True G155227
TU229892 other upstream 767577 5477914 ~ 5479819 (-) False LOC122329286
TU230261 other upstream 2020514 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 2056271 6766608 ~ 6822978 (-) False rps21

Expression Profile