RNA id: TU229897


Basic Information

Item Value
RNA id TU229897
length 900
lncRNA type sense_over
GC content 0.36
exon number 2
gene id LOC122329188
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5484212 ~ 5496474 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaaaataaataaagcaatctAGCAAAAAACAGCTCACTGCTGCATGAGGTCAAATCAGATCAAACTAACAGTTTAAAAGCTAAATGCCTTGATGgattatataaaaagaaatgcaatgtCACATTTGGTGACTAGCAccttgtttacaaaaaaactttGATCTAATACCTAGCATTAAGAACAAATGGTGCAAACAAATTTTAGCCCCTAGTGCAAACAGCTAAAGCGACCCTACCCATTAAACCATTTTCTTTATCTTAGCAAAACTGTCTGAGCAGTGATCGGTTTACATTTACTGGAATGTCAttacatgcacatttttatccCTACCATGGTGATCATGCACTGATTCTCCTTCCAGGCGCCACAGCAGCCAAAGAATGcgatgaagaagatgatgacTCCCACCACTATGAGCACTAGAGGAGCCCCGGCGTATCCATTAAGGAAGGCTGTGGTGTTGATAGAAACTTTTGCCAATACGCCCAGAACTATTAAGGCCAAGCCACACACCTAGGGccagaaaatgaaattaaagaaaaagagcaggtatttgatacattttgctCCACCTTCTACGGCCATGATGCTGTTCAATTAAATCctgtggaaaaataaaaggtaaaaatacgTAAACGAAAGTAAACATCCACACCCACCGCCCTTAATATCCGCAaggttaaaaatacagaaataatgcACAGGTCAGTGTATTGACATGAGCTAGATGAGGCTAATAATTAACTCTATATTACAGAAAACCTCATATCCCTTTCAAGTAACTAAAAGAAACCGTAACAAACGATAAGAAATAAAGAGGAATAAgaataaagatgaataaataaagataaataaataaaattaaaataaaatttaaaaaatgtgaaagattacacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247896.1 lncRNA downstream 61207 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 379767 5111844 ~ 5112964 (-) True G155157
TU229769 lncRNA downstream 395601 5096532 ~ 5097130 (-) True G155156
TU229765 lncRNA downstream 403634 5087348 ~ 5089097 (-) True G155153
TU229766 lncRNA downstream 404785 5085142 ~ 5087946 (-) False G155153
TU229905 lncRNA upstream 28567 5525041 ~ 5547708 (-) True G155238
XR_006247895.1 lncRNA upstream 157544 5654018 ~ 5662956 (-) True LOC122329299
TU229923 lncRNA upstream 318837 5815311 ~ 5919163 (-) True G155254
TU230003 lncRNA upstream 694623 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 852533 6349007 ~ 6351825 (-) True G155388
XM_043225511.1 mRNA downstream 12909 5477841 ~ 5479822 (-) True LOC122329286
XM_043225512.1 mRNA downstream 32607 5456665 ~ 5460124 (-) True LOC122329287
XM_043225523.1 mRNA downstream 43133 5444999 ~ 5449598 (-) False LOC122329294
XM_043225525.1 mRNA downstream 43133 5444999 ~ 5449598 (-) False LOC122329294
XM_043225526.1 mRNA downstream 43135 5444999 ~ 5449596 (-) False LOC122329294
XM_043225520.1 mRNA upstream 8932 5505406 ~ 5509560 (-) True LOC122329290
XM_043225530.1 mRNA upstream 13221 5509695 ~ 5513388 (-) False LOC122329296
XM_043225527.1 mRNA upstream 13221 5509695 ~ 5513388 (-) False LOC122329296
XM_043225528.1 mRNA upstream 13221 5509695 ~ 5513388 (-) True LOC122329296
XM_043225521.1 mRNA upstream 226014 5722488 ~ 5726263 (-) True LOC122329292
TU229892 other downstream 12912 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 37684 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 658211 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1297733 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 1297735 4173914 ~ 4194996 (-) False LOC122329268
TU230261 other upstream 1234377 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1270134 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1277104 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 1277104 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 1277104 6773578 ~ 6822978 (-) False rps21

Expression Profile