RNA id: XM_043225385.1



Basic Information


Item Value
RNA id XM_043225385.1
length 858
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC122329188
representative False

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5484212 ~ 5496474 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


atgcACAGCGGGAAGATACGACAGAAGCGTGCATGGATCATTGATTCGTTTACTATCGAGGAAGAATACACTGGTTCGTTACCATATAAAATAGGCAAGgttgAACTTGACAGGTCTTATTTagtaaattacatattacaCGGTCAAGGTGTGGATCAAGATCCAATGAATATTCTCAGCATTGACAAATCAGGTTTTGTTTTAGTACATGGAAGGCTGGACTATGAAACCGGCCCTAAAATCCTCCATTCGACATTTGAAGCAAGAAATGAATCCAATAATGAGCTGGATACAAAACTTGGGCTTGAGATCAAAATACTGGACATAAATGACAACGCACCTACATTTCAAAAGTCAATCTATGAAGTGACTGTGGACGAGTCACATGATCAAGGTAAAGAACTACTGACTGTACTGGCGTCTGATCAGGATGATTCAAGTACAGACAACGGAACATTTGTTTTCACAATCAAGTCTGTCACACCAAAGACAGATAATGTTGAATTTTATATTCAGCAGCAAAAAGAATCTGggacaatttattttaagggttGCTTGGACTATGAGAAAGCTCAGAAATATACCATCCTTCTTGAAAACAACATCAAACGCACAGTTTTGGTCCAGGTTTATCGGAAACTGCGTGGTGTCTGTGGCATGCCTTTGAAGCGAGGCCTGTGTCTGTGGGACGCTGTAGGCAAAGACGAGGTATTCAAGGTGTCCTCGTCCTCCTTTTCCACATCACCCGCGGCACACATTTTGCAGGGAGGCTCTGCTTGTCATGTTGCGCGCTTAAAttgggATGAAAGCAGCTCCATCAGCAGCGGTTTGAGCGACGGTTCAGACAACCTCANCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006247896.1 lncRNA downstream 52688 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 371248 5111844 ~ 5112964 (-) True G155157
TU229769 lncRNA downstream 387082 5096532 ~ 5097130 (-) True G155156
TU229765 lncRNA downstream 395115 5087348 ~ 5089097 (-) True G155153
TU229766 lncRNA downstream 396266 5085142 ~ 5087946 (-) False G155153
TU229905 lncRNA upstream 32108 5525041 ~ 5547708 (-) True G155238
XR_006247895.1 lncRNA upstream 161085 5654018 ~ 5662956 (-) True LOC122329299
TU229923 lncRNA upstream 322378 5815311 ~ 5919163 (-) True G155254
TU230003 lncRNA upstream 698164 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 856074 6349007 ~ 6351825 (-) True G155388
XM_043225511.1 mRNA downstream 4390 5477841 ~ 5479822 (-) True LOC122329286
XM_043225512.1 mRNA downstream 24088 5456665 ~ 5460124 (-) True LOC122329287
XM_043225523.1 mRNA downstream 34614 5444999 ~ 5449598 (-) False LOC122329294
XM_043225525.1 mRNA downstream 34614 5444999 ~ 5449598 (-) False LOC122329294
XM_043225526.1 mRNA downstream 34616 5444999 ~ 5449596 (-) False LOC122329294
XM_043225520.1 mRNA upstream 12473 5505406 ~ 5509560 (-) True LOC122329290
XM_043225530.1 mRNA upstream 16762 5509695 ~ 5513388 (-) False LOC122329296
XM_043225527.1 mRNA upstream 16762 5509695 ~ 5513388 (-) False LOC122329296
XM_043225528.1 mRNA upstream 16762 5509695 ~ 5513388 (-) True LOC122329296
XM_043225521.1 mRNA upstream 229555 5722488 ~ 5726263 (-) True LOC122329292
TU229892 other downstream 4393 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 29165 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 649692 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1289214 4173914 ~ 4194998 (-) True LOC122329268
XR_006247893.1 other downstream 1289216 4173914 ~ 4194996 (-) False LOC122329268
TU230261 other upstream 1237918 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1273675 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1280645 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 1280645 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 1280645 6773578 ~ 6822978 (-) False rps21

Expression Profile