RNA id: TU229905


Basic Information

Item Value
RNA id TU229905
length 298
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G155238
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5525041 ~ 5547708 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGGCTGTAGTGGATGGCACAGGACCTGGATACTCGCATTTTGTAACGCCGAACAGGACCGGGCATTGGGGATAAACCTGTGGAGAGTTTGAGAGCTGGAATACAACCAACTTGGGGATTTTGACATTTCACAAACGTGAGAGGAGAGCAGCTGTGAGaaagCAGCAGACACACAGGCCAGTCCTGATGGCAGGCGCTTGGGGGTCAGCCTGCACTGGACTCCGGCTCTAGCAGCCCACTGGGCCCTCACTTTAACTCTAAACATTTCACAGGACGAGTGCCCATGAGGTCGTTGAC

Function

GO:

id name namespace
GO:0198738 cell-cell signaling by wnt biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:1905114 cell surface receptor signaling pathway involved in cell-cell signaling biological_process
GO:0016055 Wnt signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229897 lncRNA downstream 28567 5492731 ~ 5496474 (-) True LOC122329188
XR_006247896.1 lncRNA downstream 93517 5430546 ~ 5431524 (-) True LOC122329300
TU229770 lncRNA downstream 412077 5111844 ~ 5112964 (-) True G155157
TU229769 lncRNA downstream 427911 5096532 ~ 5097130 (-) True G155156
TU229765 lncRNA downstream 435944 5087348 ~ 5089097 (-) True G155153
XR_006247895.1 lncRNA upstream 106310 5654018 ~ 5662956 (-) True LOC122329299
TU229923 lncRNA upstream 267603 5815311 ~ 5919163 (-) True G155254
TU230003 lncRNA upstream 643389 6191097 ~ 6191320 (-) True G155308
TU230114 lncRNA upstream 801299 6349007 ~ 6351825 (-) True G155388
TU230159 lncRNA upstream 936946 6484654 ~ 6484915 (-) True G155413
XM_043225530.1 mRNA downstream 11653 5509695 ~ 5513388 (-) False LOC122329296
XM_043225527.1 mRNA downstream 11653 5509695 ~ 5513388 (-) False LOC122329296
XM_043225528.1 mRNA downstream 11653 5509695 ~ 5513388 (-) True LOC122329296
XM_043225520.1 mRNA downstream 15481 5505406 ~ 5509560 (-) True LOC122329290
XM_043225385.1 mRNA downstream 32108 5484212 ~ 5492933 (-) False LOC122329188
XM_043225521.1 mRNA upstream 174780 5722488 ~ 5726263 (-) True LOC122329292
XM_043225508.1 mRNA upstream 269933 5817641 ~ 5824247 (-) True LOC122329283
XM_043225413.1 mRNA upstream 305401 5853109 ~ 5858747 (-) True LOC122329222
XM_043223967.1 mRNA upstream 312203 5859911 ~ 5865217 (-) True LOC122328332
XM_043225202.1 mRNA upstream 321418 5869126 ~ 5872179 (-) True sac3d1
TU229892 other downstream 45222 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 69994 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 690521 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 1330043 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 1183143 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 1218900 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 1225870 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 1225870 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 1225870 6773578 ~ 6822978 (-) False rps21

Expression Profile