RNA id: TU230119


Basic Information

Item Value
RNA id TU230119
length 1762
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G155391
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6485439 ~ 6499749 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTCCTCCTCTCCTTCCAGGAGCTTTCTGTATGTGGCGATCTCAATGTCCAGGGCGAGTTTGACGTTCATCAGGTCTTGATATTCTCTAATCTGGCGGGCCATGTCCTGCTTGGCTCTCTGCAGGGCATCTTCCAGGTCCTTAATACGGGCCTTGGCGTCTCTCACGGCCAACTCGCCACGCTCCTCTGCTTCTGCGATCTGGTTCTCCAGATTGGCGCGctattgaaatatttgtgtttagTTTCACTCATGTCTTTTTCACTGTCTATTACTGTACTAACACACTTGTACATTCTTCATAGTTGCTTACCTGTCCTTTCACGGCATCAATCTCGGACTGCAGTCTCTGAATCATGCGGTTAAGGTCAGCGATCTCTGTCTTTGTTGATCTAAGGTCATCACCGTATTTGTTTGCAGATGTCTGCATCTCCTCGTACTGGGAAACAGAACATAAGATGTGTAAGATTTTGTATCTCAATCAACTCAATGAACATCTAGATTGAGACTTACAGTTTGGATTATAATCAAAAGTTTACACACCTTGGACTTGTACCACATCTCAGCCTCAGCGCGGCTTCGGTTAGCGATATCTTCATACTGAGCGCGGACCTCAGCGACGATGGCGTCCATGTCCAGATTCCTGCTGTTGTCCATCTCAACAACAACTGAGGTGTCCTTGATCTGGGACTGCAGCTCACGGATCTCCTACAAGTTCACAAGAAAGAGTGTGACATTTCAAAATGCgttttttcaaaatgatttttgtagATAAACTGTATGTTTGGTGGGACTCTCTAGCTGTAATGTACCTCCTCAAAGATCTGCCTGAGGAAGTTGATCTCGTCAGTGAGGCTTTCCAGTTTGGCCTCCAGCTCAACCTTATTCATGTAGGCCTCATCAACATCCTACAATAAGCAAACACAATTTagtcattatttaatattaaaagtaagCGTTTATGAGTGGTCGTGAGTAATAAAAGACAATCTACAAACCTTCTTGATGAGCACAAACTCGTTCTCGCACTCTGTGCGCTTGTTGATCTCATCCTCATACCTGTTTTGAAGTCCTCAACAAGGCCTTGCATGTTGTGCAGGTCAGCCTCCAGCTTCATTTTATCGTTTCCAAGGCTGTCGAGCTGTCTGCGCAGGTTGGCGATGTAGGCCTCGAACATGGCGTCGATGTTGGAGCGCGTGGCCGTCTGGTTCTGAAGGAGGCTCCATTTTGTCTCCAGCATCTTGTTTTGCTGCTCCAGGAACCCACCTTATCAATGAAGGAAGCGAAACGGTTGTTGAGGGTCTTGATTTGCTCTTTCTCCTGGGTGCGGACAACTTGGATGTTAGGGTCGATCTCCAGGTTCAGAGGTGCCAGGAGGCTCTTGTTGACGGTGACGGCTTGGATGGGTGCTACGACACCGCCACCCATGCCCATGCCCATTCCCATGCCAAGACCGTAGGCTGAAGAGCTGCTGATGAAGCCACCACCTCCCATTCCAGCTCCCATGCCACGGTTAGCACCTCCAAAGGAGCTACGCACGCTGTAGCTCTGCCGGCTGGCACTGGGGCCGGCATAGGACAGACTGCTGAAGCTGCGTGGGGCAGATTTAGAAGAAGAGGACTTCACAGTGTAGCTGGTGGTCTTGTTGAACGACATCCTGCTGGTGTGTTTTCTGTCTTGTACTAGTAGAGAATGACCTGGAGCAGGGGGAGCGAGAGCAGCAGATATGAGCCTTGTCTGCTGTGCTGGAGAAACTCGAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230159 lncRNA downstream 524 6484654 ~ 6484915 (-) True G155413
TU230114 lncRNA downstream 133614 6349007 ~ 6351825 (-) True G155388
TU230003 lncRNA downstream 294119 6191097 ~ 6191320 (-) True G155308
TU229923 lncRNA downstream 566276 5815311 ~ 5919163 (-) True G155254
XR_006247895.1 lncRNA downstream 822483 5654018 ~ 5662956 (-) True LOC122329299
TU230127 lncRNA upstream 20871 6509715 ~ 6514093 (-) True G155392
TU230195 lncRNA upstream 123149 6611993 ~ 6612524 (-) True G155435
TU230208 lncRNA upstream 135575 6624419 ~ 6625268 (-) True G155443
XR_006247875.1 lncRNA upstream 305259 6794103 ~ 6804919 (-) True LOC122328996
TU230288 lncRNA upstream 346531 6835375 ~ 6835589 (-) True G155508
XM_043224781.1 mRNA downstream 27520 6454153 ~ 6457919 (-) True krt18a.1
XM_043224782.1 mRNA downstream 32100 6450959 ~ 6453339 (-) True krt18a.2
XM_043225115.1 mRNA downstream 50464 6422212 ~ 6434975 (-) False eif4ba
XM_043225070.1 mRNA upstream 26967 6515811 ~ 6521844 (-) True zgc:171775
XM_043224003.1 mRNA upstream 109874 6598718 ~ 6602083 (-) True slc16a7
XM_043224004.1 mRNA upstream 109874 6598718 ~ 6602072 (-) False slc16a7
XM_043224005.1 mRNA upstream 109874 6598718 ~ 6602063 (-) False slc16a7
XM_043224770.1 mRNA upstream 219868 6708712 ~ 6713207 (-) True adrm1
TU229892 other downstream 1005620 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 1030392 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1650919 4831818 ~ 4834520 (-) False LOC122329181
XR_006247892.1 other downstream 2290441 4173914 ~ 4194998 (-) True LOC122329268
TU230261 other upstream 242007 6730851 ~ 6731886 (-) True G155489
TU230276 other upstream 277764 6766608 ~ 6822978 (-) False rps21
TU230273 other upstream 284734 6773578 ~ 6822978 (-) False rps21
TU230275 other upstream 284734 6773578 ~ 6822978 (-) False rps21
TU230277 other upstream 284734 6773578 ~ 6822978 (-) False rps21

Expression Profile