RNA id: XM_043224020.1


Basic Information

Item Value
RNA id XM_043224020.1
length 415
RNA type mRNA
GC content 0.49
exon number 6
gene id rps21
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6766608 ~ 6823032 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaatcCTGGTGCTCTTATCCTAGCTTCCGTGTTACGTCACTTCCTGGCTCTGTCTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattgga

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247875.1 lncRNA downstream 16017 6794103 ~ 6804919 (-) True LOC122328996
TU230208 lncRNA downstream 195668 6624419 ~ 6625268 (-) True G155443
TU230195 lncRNA downstream 208412 6611993 ~ 6612524 (-) True G155435
TU230127 lncRNA downstream 306843 6509715 ~ 6514093 (-) True G155392
TU230121 lncRNA downstream 321187 6488624 ~ 6499749 (-) False G155391
TU230288 lncRNA upstream 12343 6835375 ~ 6835589 (-) True G155508
TU230378 lncRNA upstream 14097 6837129 ~ 6838566 (-) True G155578
TU230388 lncRNA upstream 106654 6929686 ~ 7067824 (-) True G155586
TU230389 lncRNA upstream 240546 7063578 ~ 7067824 (-) False G155586
TU230405 lncRNA upstream 277276 7100308 ~ 7106154 (-) True G155597
XM_043225142.1 mRNA downstream 1093 6805369 ~ 6819843 (-) False acss2
XM_043225143.1 mRNA downstream 1093 6805369 ~ 6819843 (-) False acss2
XM_043225141.1 mRNA downstream 1093 6805369 ~ 6819843 (-) True acss2
XM_043224767.1 mRNA downstream 99366 6713359 ~ 6721570 (-) True osbpl2b
XM_043224772.1 mRNA downstream 108241 6708712 ~ 6712695 (-) False adrm1
XM_043223998.1 mRNA upstream 15775 6838807 ~ 6857465 (-) True cables2b
XM_043225551.1 mRNA upstream 34975 6858007 ~ 6867300 (-) True ccm2l
XM_043224119.1 mRNA upstream 48945 6871977 ~ 6926416 (-) True LOC122328429
XM_043224124.1 mRNA upstream 141710 6964742 ~ 6981961 (-) True LOC122328436
XM_043225536.1 mRNA upstream 171135 6994167 ~ 7003523 (-) True LOC122329304
TU230261 other downstream 89050 6730851 ~ 6731886 (-) True G155489
TU229892 other downstream 1341117 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 1365889 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1986416 4831818 ~ 4834520 (-) False LOC122329181
XR_006247893.1 other downstream 2625940 4173914 ~ 4194996 (-) False LOC122329268
TU230387 other upstream 34983 6858015 ~ 6860648 (-) False ccm2l
TU230380 other upstream 41393 6864425 ~ 6867281 (-) False ccm2l
TU230394 other upstream 143795 6966827 ~ 6981789 (-) False LOC122328436
TU230386 other upstream 171149 6994181 ~ 6996809 (-) False LOC122329304
TU230379 other upstream 177553 7000585 ~ 7003487 (-) False LOC122329304

Expression Profile