RNA id: TU230292


Basic Information

Item Value
RNA id TU230292
length 1782
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G155509
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6836963 ~ 6839161 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acaATAGTTGTGCTATGAACAGTTGGTCACTTCCAGTAAAACGAATGACTCTCTATGGCCCTCTGCTGGTCGACACAGCTTCTTTCCTGTGCTGTAACCCCTTTAGGTTTATCTCCACCCAGCTGATACAAGTACAAAAAGTACTTCATATGCCCACAGCATTAATGTATAGATgagaagtaaacaaaaacaagagatcttttattaaaaaggaaatttaGTAAATAACATTGTGGCTTAATTCTTGTTAAACCTACAAATGAATACAGGTCAAGAGCAGTGAGTGATTTTCATCTTTCATTTTCTTGGATAGCACTGAGCACACCGACAGCAGCTAGTAAATTAGACGCCGTCATTTTAAGAGACAATTATCCAATATAACAATGCACACGAGATTCGATCTCCAAGGTGGGTATTTTGACAtgatttgtatgtatttgttgGTGCAAAAACGATTAGACAGCCAGTGCTCAAAAAGTCGGTTGAGATGGCTGGGGGGGCCccccacagaccgtgggccctTAAAATTGAGGCCCTGACTGCAACCAACATGTGGAATCATCCGGCATGCCCTTCAATCTGTGTCTGAGAGTCACGCGTGAGAAATCTATTCAAGTTCGGCAAAGTGAAACAAACTCTCAAAAAGCGAGCTCCAAAGCTCTGAGCTCTCTGAGCTACCCACAAtcccgagagagagagagagagagagagagagagagagagagagagcagggaaGTACATGAAAGGACATCTGTACTCCAAGGACAGAAATGAGTTATGTTTGCAGTACATCTTTAGGAAAGATGCTAATATGATTTCAGCAGCTCTACTATACAGCTTATATATCCCTTATCTGCTGCTGGCGTCCTTCCCAGCCTTCCTATCATAATTTGTAAATGGAAGATTAGCTAAAACTGCTCAGAAGAGATCAGAGGAAGTTTTGATATCCGCTTCCTATTCTCTTGAGAATTTGCTCTCCTTCCCCTCTGACCTTTGAAACAAACCACACCGTCTCTGTAGGcaaaaaacacaactgaaacgtcacataaaaaaaaataatgccatACGACTCGTTAAAGCAGAAACGGTCCGCCGAGCCGACATATTATTCTGGATAATACGGtgtggaaaaataaaagcataaccGTCACAACAGACAGGTCCGGCTAAACCGTGCTCgaataatattgttaataataataataaaaacaaccaaacagGCAAAAAGGGATAATACCCTGTCAATGAAAGCAATTACAGTGATTTGGAGTGCAATACTGGAGGCTATAGAAAAATCACAGTGTAAATAAACCAAATACAACTGCTTTACTTCCATGTTTCCCTTTaccaaattataaataataaaaaaaaaaaaatcctaggCACTTTAATTCAACGTGTTTGATTTTACATCCATTAGACTTGCTATTTTCGTTCGCTCAGGGGCTCTTGATGACAAAAAAGtagtgcacacacaaacacaaaactaacAAAAGCCTATAAAAACGTCCAATTTACGTGTGGTGTACAAATATCTCCTGAGAACACGAGTGGGATGATGCTTTTTAGGCCTTTGTAGCAAAATCCGCTTCCTAACAGTTTTCCTGTTAACATGTGATTGCAAATCGCTTCCTTTAGAGGGCAGCTCTGGCACACTCGCCTGTAAATGGTGCTTTCACAGCACAGCATCGTATCACGGGAATGCAACGTCTTATTTTAGGATTAccatcataaaaatatgacatttgtGGACGACGTTTACAACGTAAATAGAAGGATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230227 lncRNA upstream 14913 6797111 ~ 6822050 (+) True G155457
XR_006247834.1 lncRNA upstream 108753 6725037 ~ 6728210 (+) True LOC122328804
TU230221 lncRNA upstream 113099 6720370 ~ 6723864 (+) True LOC122328803
XR_006247833.1 lncRNA upstream 114720 6720456 ~ 6722243 (+) False LOC122328803
TU230224 lncRNA upstream 129704 6703511 ~ 6707259 (+) True G155455
TU230441 lncRNA downstream 562246 7400990 ~ 7401189 (+) True G155619
XR_006247860.1 lncRNA downstream 1028036 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA downstream 1028036 7866780 ~ 7868674 (+) False LOC122328944
TU230505 lncRNA downstream 1081459 7920203 ~ 7921525 (+) True G155651
TU230496 lncRNA downstream 1083278 7922022 ~ 7923577 (+) True G155645
XM_043224348.1 mRNA upstream 63977 6730816 ~ 6772986 (+) True soga1
XM_043224765.1 mRNA upstream 128296 6640878 ~ 6708667 (+) True lama5
XM_043224766.1 mRNA upstream 128296 6640878 ~ 6708667 (+) False lama5
XM_043224761.1 mRNA upstream 203616 6622854 ~ 6633347 (+) True mapre1b
XM_043224958.1 mRNA upstream 214553 6605868 ~ 6622410 (+) True prkcbp1l
XM_043223976.1 mRNA downstream 459616 7298360 ~ 7305534 (+) True tcea2
XM_043224105.1 mRNA downstream 620754 7459498 ~ 7487536 (+) True oprl1
XM_043225219.1 mRNA downstream 845560 7684304 ~ 7765052 (+) False myt1b
XM_043225220.1 mRNA downstream 845560 7684304 ~ 7765052 (+) False myt1b
XM_043225222.1 mRNA downstream 845560 7684304 ~ 7765052 (+) False myt1b
TU230095 other upstream 242228 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 3140325 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 3140325 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 3827353 2995169 ~ 3009610 (+) False rbm10
TU230359 other downstream 387250 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 460535 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 1492997 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 1649342 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 2187764 9026508 ~ 9033098 (+) True lzic

Expression Profile