RNA id: TU230359


Basic Information

Item Value
RNA id TU230359
length 490
RNA type TUCP
GC content 0.60
exon number 2
gene id G155561
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7225994 ~ 7238919 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgaaggggattagccttgtcaccgtcgccgttaaatacctgaccgcgtctctcctcgggagaccggtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccaggaagggtgcgcgatggacctcaccccgccgtccgtgaacacagagctcatcccactctgccgcccggagcaacgaagcgacggagacgccgcggaagaagccgccgcccctcgcgccccggaccagaaaaaggggagcgtgtgcgaccgccggactccgcccttacctggacccttcccccctggaacacggcctcaaccttcactttccccgcggcacgacgaggacaccagatccccccttttatttggacacttttcccatggacactttattttgtatttattttatttctgttaataataaaaagcctctccgaggcctgacgccacgcccactgtgtctgtcgttggctcctcccgtcacagtggtggagaatgc

Function

GO: NA

KEGG:

id description
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230289 lncRNA upstream 386833 6836963 ~ 6839161 (+) True G155509
TU230292 lncRNA upstream 387250 6836963 ~ 6838744 (+) False G155509
TU230227 lncRNA upstream 403944 6797111 ~ 6822050 (+) True G155457
XR_006247834.1 lncRNA upstream 497784 6725037 ~ 6728210 (+) True LOC122328804
TU230221 lncRNA upstream 502130 6720370 ~ 6723864 (+) True LOC122328803
TU230441 lncRNA downstream 162071 7400990 ~ 7401189 (+) True G155619
XR_006247860.1 lncRNA downstream 627861 7866780 ~ 7868674 (+) True LOC122328944
XR_006247861.1 lncRNA downstream 627861 7866780 ~ 7868674 (+) False LOC122328944
TU230505 lncRNA downstream 681284 7920203 ~ 7921525 (+) True G155651
TU230496 lncRNA downstream 683103 7922022 ~ 7923577 (+) True G155645
XM_043224348.1 mRNA upstream 453008 6730816 ~ 6772986 (+) True soga1
XM_043224765.1 mRNA upstream 517327 6640878 ~ 6708667 (+) True lama5
XM_043224766.1 mRNA upstream 517327 6640878 ~ 6708667 (+) False lama5
XM_043224761.1 mRNA upstream 592647 6622854 ~ 6633347 (+) True mapre1b
XM_043224957.1 mRNA upstream 603584 6603646 ~ 6622410 (+) False prkcbp1l
XM_043223976.1 mRNA downstream 59441 7298360 ~ 7305534 (+) True tcea2
XM_043224105.1 mRNA downstream 220579 7459498 ~ 7487536 (+) True oprl1
XM_043225219.1 mRNA downstream 445385 7684304 ~ 7765052 (+) False myt1b
XM_043225220.1 mRNA downstream 445385 7684304 ~ 7765052 (+) False myt1b
XM_043225222.1 mRNA downstream 445385 7684304 ~ 7765052 (+) False myt1b
TU230095 other upstream 631259 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU229052 other upstream 3529356 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 3529356 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 4216384 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 4216516 2995169 ~ 3009478 (+) False rbm10
TU230347 other downstream 60360 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 1092822 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 1249167 8488086 ~ 8488641 (+) True G155799
TU230843 other downstream 1787589 9026508 ~ 9033098 (+) True lzic
TU230931 other downstream 1881965 9120884 ~ 9122374 (+) False G155927

Expression Profile