RNA id: TU230387


Basic Information

Item Value
RNA id TU230387
length 1593
RNA type TUCP
GC content 0.42
exon number 2
gene id ccm2l
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6858007 ~ 6867300 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCaatagaatttacatttttaagcggatagatgccaataaagaattGTTCCTGCATAAACTGGActgaataaagtatttttaaaattttgcctTCAAATGTGGTTCCCAacttttggaaacacaaaatgaatcatggttattttaaaataccagTACTTCCATTTCCCAATAGTATAGAATGAGTATATTTCCATctgtgggtgaacaatccactGCAGTTGTCTAAATGAGTGTCTCTTAAACGTTCTGTGTCCTGTTCTCATTGGTTAGTTGAGGAGTAAGCTGGTGCCtcaggagattcaggagtttgCTCTGTTTCTGAGAGAATACAGACTTGGTGCTCCGATAGAGCAGTTCTGCACTGACCTGCTGCAGCTCTATGGAGACTCGCGCAAGTTCCTGCTGCTTGGCATGAGGCCCTTTATTCCAGATAAGGATGTAGGAGTGTTCGAGACGTTTCTGGAAGACATTGGGATCCGAGAGGGTGGGATTTTGACAGACAGTTTTGGCCGGATCAAGCGGAGCATGAGCAGCACATCTGCCACAGCAGTCCGGGGCTATGACGGCTGGACTCTTCCTTCCGGTTCCCAGGATTTTAACCGCAGAATTGATGACATCACACACAACATTGAGGCTTTGGGCTTTGAGGAAGGGAACGGAGACATAGAAGAGGAGGATTATTACCTGTGAACTGTTGCACTGGAGAGTTTTTAAAGACAGGGTTTAGGTCGCACATTTCTTTGATACAAAATATTCAAACTAGTTTATAGCATTTATAGTATATGTGCACTTTACTGGGCCACACGGAGTGCTGCTGATGAAAATGGACGTTTTGCATCCTATTTGCATTTGTGAATAGGCGTATTATTTGCATGCAAGTTTGATTATGTCATGTTCTGCGTCCGTGAGTTACAAAAGAGCACCAATGCAGTGAGGAAGTGCCAGAGAGAACCTAagtaattacatattatttggAGAAAAGGTCACTTAGAcataaaaggagaaaaagagtAAGCAATCATATAATAATGATGACAGTGATGATGATGGTAATCTTCTGGAGCCGGAGGGTCGTTGACTGTGGCTGCTGTCTGAAGGGAGAGTAACTCATGAAAAACTCAACCTTGACATTCTTTCCAGTGACACTGCCACCTTGCCACAGTCTAGTGCCCTTCCCTTCCCTCTTATCTATGCCAACCACTGAAGGTTGATGGGCTCTGCGCCCAGCATCGGGGGTTATCAAAATGGCACATACATCTGTCAGGCTAAACGTTTGTTATGTAATAGGACTGGGCAGAAGAACAGGGCCAGATAGGGTTTAGTTTAAAGTTAAACCTCTTCTCACACCCAAACAATCTTAGTAGTCAAACCAGCAGGGTGGCAATAACAAATGTTTGTCCATGGCCGTGTGATGAAGAGGGCCAGCTGAGGTCCTCTGTGGAATATCTTAGTCAGTAGGTCATAGGACGGAGGGCCCAGTGGAATTATTTTTGACTTACGTTCCCATTGAAATAAAGAACCGACTGACTTTGTAGTACTGTTTATAATAgttaaacactgtaaaatgttatgaattaaaatgttatacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230378 lncRNA downstream 19449 6837129 ~ 6838566 (-) True G155578
TU230288 lncRNA downstream 22426 6835375 ~ 6835589 (-) True G155508
XR_006247875.1 lncRNA downstream 53096 6794103 ~ 6804919 (-) True LOC122328996
TU230208 lncRNA downstream 232747 6624419 ~ 6625268 (-) True G155443
TU230195 lncRNA downstream 245491 6611993 ~ 6612524 (-) True G155435
TU230388 lncRNA upstream 69038 6929686 ~ 7067824 (-) True G155586
TU230389 lncRNA upstream 202930 7063578 ~ 7067824 (-) False G155586
TU230405 lncRNA upstream 239660 7100308 ~ 7106154 (-) True G155597
TU230413 lncRNA upstream 259755 7120403 ~ 7301136 (-) True G155605
TU230414 lncRNA upstream 262281 7122929 ~ 7124586 (-) True G155606
XM_043223998.1 mRNA downstream 550 6838807 ~ 6857465 (-) True cables2b
XM_043224020.1 mRNA downstream 34983 6820936 ~ 6823032 (-) False rps21
XM_043224021.1 mRNA downstream 34983 6820936 ~ 6823032 (-) False rps21
XM_043225142.1 mRNA downstream 38172 6805369 ~ 6819843 (-) False acss2
XM_043225143.1 mRNA downstream 38172 6805369 ~ 6819843 (-) False acss2
XM_043224119.1 mRNA upstream 11329 6871977 ~ 6926416 (-) True LOC122328429
XM_043224124.1 mRNA upstream 104094 6964742 ~ 6981961 (-) True LOC122328436
XM_043225536.1 mRNA upstream 133519 6994167 ~ 7003523 (-) True LOC122329304
XM_043224180.1 mRNA upstream 148249 7008897 ~ 7060251 (-) True LOC122328474
XM_043225559.1 mRNA upstream 227529 7088177 ~ 7091244 (-) True sox18
TU230276 other downstream 35037 6766608 ~ 6822978 (-) False rps21
TU230273 other downstream 35037 6773578 ~ 6822978 (-) False rps21
TU230275 other downstream 35037 6773578 ~ 6822978 (-) False rps21
TU230277 other downstream 35037 6773578 ~ 6822978 (-) False rps21
TU230278 other downstream 35037 6773578 ~ 6822978 (-) False rps21
TU230380 other upstream 3777 6864425 ~ 6867281 (-) False ccm2l
TU230394 other upstream 106179 6966827 ~ 6981789 (-) False LOC122328436
TU230386 other upstream 133533 6994181 ~ 6996809 (-) False LOC122329304
TU230379 other upstream 139937 7000585 ~ 7003487 (-) False LOC122329304
TU230401 other upstream 415800 7276448 ~ 7278323 (-) True G155596

Expression Profile