RNA id: TU230388


Basic Information

Item Value
RNA id TU230388
length 734
lncRNA type read_through
GC content 0.46
exon number 3
gene id G155586
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6929686 ~ 7067824 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTTCAAATCACCGCTGGTGAAATCCACGAAGACGCCGCCATTATCTTCGAGTGGGTTTAAAAgAGTTGCCTTCGGTCCCCCCCCATGCCTCTTCTTTGAACCGTCTTCTCCCGACGTCAGGCTGTCGTGGCGGATCACCAGATCGGTGCTGCAGCAGTGGCTTGGCAGTCGTCTTACCGGGGTGAGAGGACCAGACAAACAACGGCGAGCAGACATGGCAGCTGACAGCCTGCACGAGATTCCTGCCgctgacacacaaacaaactgagCGTCTCAAACACGAGACTAGCGTAACATCGCATGCCTTCCAGCGATAGAGTAATACATTCGTGCATATCGTGACAAACAGCGGCTTAGACAGCCTGGGCTGttgaatatgttaaaatagattatatgtattatataaatatggcgagtaacattattaattcattgtgCTTTGTGGGTTTTTAAGACCCTAGTTGTATTTGTGACAGAGGTGGAGATAAGACATGACAGACGAGTCTTCAGTGTATCACATAATAAACATATCCATGTTTCCAGTTAAATGCCATCTTCTGTTAACTACCATTTATGATAAGTCACTCGCTCTTCTGTTGTGAGGAAAGTAGCCTTCACTACAGTGTTTTGACATGCTGTGATGCTTGTGACATCTGCAAGACTCTGTAATGCCTGAACCTGTACTGTCAGCCATGTTTCTAACTAATAAAATGAGCTAATGAGACCTAGCC

Function

GO:

id name namespace
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230378 lncRNA downstream 91120 6837129 ~ 6838566 (-) True G155578
TU230288 lncRNA downstream 94097 6835375 ~ 6835589 (-) True G155508
XR_006247875.1 lncRNA downstream 124767 6794103 ~ 6804919 (-) True LOC122328996
TU230208 lncRNA downstream 304418 6624419 ~ 6625268 (-) True G155443
TU230195 lncRNA downstream 317162 6611993 ~ 6612524 (-) True G155435
TU230405 lncRNA upstream 32484 7100308 ~ 7106154 (-) True G155597
TU230413 lncRNA upstream 52579 7120403 ~ 7301136 (-) True G155605
TU230414 lncRNA upstream 55105 7122929 ~ 7124586 (-) True G155606
TU230416 lncRNA upstream 57004 7124828 ~ 7305564 (-) True G155607
TU230442 lncRNA upstream 333157 7400981 ~ 7401192 (-) True G155620
XM_043224119.1 mRNA downstream 3270 6871977 ~ 6926416 (-) True LOC122328429
XM_043225551.1 mRNA downstream 62386 6858007 ~ 6867300 (-) True ccm2l
XM_043223998.1 mRNA downstream 72221 6838807 ~ 6857465 (-) True cables2b
XM_043224020.1 mRNA downstream 106654 6820936 ~ 6823032 (-) False rps21
XM_043224021.1 mRNA downstream 106654 6820936 ~ 6823032 (-) False rps21
XM_043225559.1 mRNA upstream 20353 7088177 ~ 7091244 (-) True sox18
XM_043225082.1 mRNA upstream 242746 7310570 ~ 7342699 (-) False rgs19
XM_043225083.1 mRNA upstream 242746 7310570 ~ 7342605 (-) False rgs19
XM_043225085.1 mRNA upstream 242746 7310570 ~ 7342558 (-) False rgs19
XM_043225084.1 mRNA upstream 242746 7310570 ~ 7342531 (-) True rgs19
TU230380 other downstream 62405 6864425 ~ 6867281 (-) False ccm2l
TU230387 other downstream 69038 6858015 ~ 6860648 (-) False ccm2l
TU230273 other downstream 106708 6773578 ~ 6822978 (-) False rps21
TU230401 other upstream 208624 7276448 ~ 7278323 (-) True G155596
unassigned_transcript_2580 other upstream 1118073 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 1118371 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 1118993 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 1119293 8187117 ~ 8187210 (-) True trnai-uau_8

Expression Profile