RNA id: TU230414


Basic Information

Item Value
RNA id TU230414
length 1486
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G155606
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7122929 ~ 7124586 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCATTTATCTTACAGCTACTGTGATGTAAACCTTGTGACAACTAACCCAGGTCTCCCCTAGTTTATCTCCTTCTATTGCATTCAACTCGTTTTAAACGAACGATTTCCGGTCAAGTCAATAAAGTTTTATTAGTTAGTCCAGCTGTGAAGTCTGCCTACAGCAAGTAAACACCGCCACCGTGTGGCTAAACTATACAGACATGCATCAACGGACGCgagggttttttttcagcaagccAGGTGACTCAAGACACTGCGGgataaataaaccaaaagagTCTTACCTTCCACCGGTTTCCACACTCGTTGCACAGCACGAAGGTGGTCATGGGTTCATCTGCGCTGCGTGTCTGGACCTGCGGAGAGAGATGGTGCATTCCTGCTCGTTTCATGCTTCCATGCAGTTTAAGCCCACAGACATGCGAACGAATCAAAGACTTGGGAATCAAAGACGGCGAGGCCGTTTGCGTTtcagaatctctctctctctcttttttattttacatattgctTAAGTGTGCAGATCCTTTCAGGAGGACTCGTAACCCGAGTCAAGCTTCAAGATTGAGAGCCATGGCAAGTTTAAACATTTCTGGTCTGTTGTAACGGGCATACCTGAGTGTAAGTGCAGTTCTTGCCCTTGCATTTTCCACAGACGAACATGTCCGTCTCGGTGCCGCCCACTTTGGAGAGCTGATGCTCTCGAATGGACTCCTTGGTCAGCGCTTTCCTGATCTCTTTGAGCTCTGCGCTGGCCATCTCCTGCCAAACACGcaattaacacaaacacaccactTCACATCCTGCAGAGAAGCTGCGGTTTAGCGCTTGGCGGGCCAAAGTCGAACCCGAGCGTACCTCTGCGGTCATGCTGGCGATGCGGTCTGCAGAGATGTTGCCGCACAAGACGTTCCGGCGCAAGTCTGGGTTTTTCTGGTCCTTGAGGTTGGAGATGCGACTCCTCAGTCTGGTCTTGTACTTCATGTCAGTGGACTTGAACTCCTGGTAGATACGTGTCATGGTGTACAGTCAAGAAAGCACACACCGGCCATTATTTTACATGTTCCTTTAAAGATGGAGCGTGCGTTCTTTAAAAGGCGTTAAATAGTTTCTCCTTTCACAGCAAGACGACTAAGTAAAACGTTGTTCGCTGGCGAATGGAAACGCAAACAAAAAGCCTAAGTACTGTGcgactaattaaaatattgcactGTTTGTTTGAGGTcttacaaaagatttctatttcaaataaatgtgctcGTGAACTTTCAATTTGATTGCACTTTgccatttacacaaaaatattaagcagcacaacataTAATCGAAAAATGTTCCCTAAGCTGCAActcagcatattagattgatttatGAAGCAccatacagaaataaatgagattttactattagaaaacagttattatatattgtaataaatattttacaacttTCATAACTTTCAAACAGTAGTTTGTGTTATAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230405 lncRNA downstream 16775 7100308 ~ 7106154 (-) True G155597
TU230388 lncRNA downstream 55105 6929686 ~ 7067824 (-) True G155586
TU230389 lncRNA downstream 55105 7063578 ~ 7067824 (-) False G155586
TU230378 lncRNA downstream 284363 6837129 ~ 6838566 (-) True G155578
TU230288 lncRNA downstream 287340 6835375 ~ 6835589 (-) True G155508
TU230416 lncRNA upstream 242 7124828 ~ 7305564 (-) True G155607
TU230442 lncRNA upstream 276395 7400981 ~ 7401192 (-) True G155620
TU230445 lncRNA upstream 334945 7459531 ~ 7459780 (-) True G155623
TU230446 lncRNA upstream 336343 7460929 ~ 7461302 (-) True G155624
TU230449 lncRNA upstream 354909 7479495 ~ 7480570 (-) True G155627
XM_043225559.1 mRNA downstream 31685 7088177 ~ 7091244 (-) True sox18
XM_043224180.1 mRNA downstream 62678 7008897 ~ 7060251 (-) True LOC122328474
XM_043225536.1 mRNA downstream 119406 6994167 ~ 7003523 (-) True LOC122329304
XM_043224124.1 mRNA downstream 140968 6964742 ~ 6981961 (-) True LOC122328436
XM_043224119.1 mRNA downstream 196513 6871977 ~ 6926416 (-) True LOC122328429
XM_043225082.1 mRNA upstream 185984 7310570 ~ 7342699 (-) False rgs19
XM_043225083.1 mRNA upstream 185984 7310570 ~ 7342605 (-) False rgs19
XM_043225085.1 mRNA upstream 185984 7310570 ~ 7342558 (-) False rgs19
XM_043225084.1 mRNA upstream 185984 7310570 ~ 7342531 (-) True rgs19
XM_043225086.1 mRNA upstream 185984 7310570 ~ 7341537 (-) False rgs19
TU230379 other downstream 119442 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 126120 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 141140 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 255648 6864425 ~ 6867281 (-) False ccm2l
TU230387 other downstream 262281 6858015 ~ 6860648 (-) False ccm2l
TU230401 other upstream 151862 7276448 ~ 7278323 (-) True G155596
unassigned_transcript_2580 other upstream 1061311 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 1061609 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 1062231 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 1062531 8187117 ~ 8187210 (-) True trnai-uau_8

Expression Profile