RNA id: TU230445



Basic Information


Item Value
RNA id TU230445
length 250
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G155623
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7459531 ~ 7459780 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GATCGCTTAAGCGTCCGACTCCTGCAAGCACGCGAGGAATTCTTGTTTCCGctattctttctgttttaaGCAGTCTCGGAGCTCTGTTTCCAACAGCACGCAGATATTCACATCACTGTGTATCTCAAGCAAAGgagaaacatgttttatgtttttttttcctctctctaaACGAGCGCAGTGGGAGGGGGAGGTGCGCTAAAGCACTTGCTTGTTGTTGCGAATCTTCAGCAGCGACTTACATCTCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU230442 lncRNA downstream 58339 7400981 ~ 7401192 (-) True G155620
TU230416 lncRNA downstream 153967 7124828 ~ 7305564 (-) True G155607
TU230413 lncRNA downstream 158395 7120403 ~ 7301136 (-) True G155605
TU230414 lncRNA downstream 334945 7122929 ~ 7124586 (-) True G155606
TU230405 lncRNA downstream 353377 7100308 ~ 7106154 (-) True G155597
TU230446 lncRNA upstream 1149 7460929 ~ 7461302 (-) True G155624
TU230449 lncRNA upstream 19715 7479495 ~ 7480570 (-) True G155627
TU230450 lncRNA upstream 22247 7482027 ~ 7482492 (-) True G155628
TU230451 lncRNA upstream 24143 7483923 ~ 7484205 (-) True G155629
TU230545 lncRNA upstream 306468 7766248 ~ 7817371 (-) True G155670
XM_043225082.1 mRNA downstream 116832 7310570 ~ 7342699 (-) False rgs19
XM_043225083.1 mRNA downstream 116926 7310570 ~ 7342605 (-) False rgs19
XM_043225085.1 mRNA downstream 116973 7310570 ~ 7342558 (-) False rgs19
XM_043225084.1 mRNA downstream 117000 7310570 ~ 7342531 (-) True rgs19
XM_043225086.1 mRNA downstream 117994 7310570 ~ 7341537 (-) False rgs19
XM_043224185.1 mRNA upstream 62284 7522064 ~ 7525501 (-) True npbwr2b
XM_043224442.1 mRNA upstream 314521 7774301 ~ 7782717 (-) True kif3b
XM_043224007.1 mRNA upstream 324525 7784305 ~ 7788287 (-) True LOC122328356
XM_043224571.1 mRNA upstream 362342 7822122 ~ 7832584 (-) True LOC122328712
XM_043225053.1 mRNA upstream 394524 7854304 ~ 7861354 (-) True LOC122328943
TU230401 other downstream 181208 7276448 ~ 7278323 (-) True G155596
TU230379 other downstream 456044 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 462722 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 477742 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 592250 6864425 ~ 6867281 (-) False ccm2l
unassigned_transcript_2580 other upstream 726117 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 726415 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 727037 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 727337 8187117 ~ 8187210 (-) True trnai-uau_8
unassigned_transcript_2584 other upstream 729033 8188813 ~ 8188906 (-) True trnai-uau_9