RNA id: TU230540


Basic Information

Item Value
RNA id TU230540
length 1930
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G155669
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7819746 ~ 7852251 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGATTGTTTTTGGGCTATCTAAGCATTGGTCTCGAGGAGAACTAAAGAAAATGGACTCCTGGACTGATGAAATGTGTAGAAATCGAGCCCGGGATCATAGAATTGCCAGATCCAATCATTGTATGCTTAGAATAGTCTTCCTGTACAGATGTAGTGTGATTATATAAAAAGCagattattttcaacatttttggtcaaaaaaaaatagaaagGTACTAACATTTTGGTCTTTTTATTGTATGaaggagtttaaaaaaaataactaatgttTTTCTAAAGTATTCCTGAGTAGGGCCAAAGATTTTGAACGCAACTATTTGAATTTGTGAAAAACACCAAAGTGCTTTATATACCTTGAATTTTTGGTGATTACCAATAAAtagactttttaattattttttttttctcttcgttTTGACACAACCTTtacaatataatttgtaaacCTTGCAATATGACAATGATTCTGTAGTGTGGGGTGCAGAAACGATGCCTGCCTTCATACGAGTGTGGAATAAAATTACAATGCGGCGTCAACCGGCAACGGTAATCGAATTAACATGATAAAATGCATCATACCACCACAAACTCCAATATTGACAAAATGCGGGTGCATTACGGCAGTACACATGCAGACGTTATTTAGTATTTTGGAGAACACAGTAGAGGCAAGGAAAAGAGTTCCAACAGTGGAGGGCCGACTTTGGGGTGCAGTCATATTAGCGAAATTTCGCAGGCAAAGAAGGTCCAACatcaaaagtcattttcaaacCAAGCGTTTTTTTCAACAAGTCAACATGGCAATTTTGCGTTACCAACGGGCAAGAGGTACTTTTCCGTACTCCCACGAAACGCCAATCGCGTGAAGCACCACTCACATCAAACCGAGCAGTTGTGGGGAATTCTCTCGAACCCCGCGGGCACGAGAGACATCTGCATGAGGAACTTCTACCTCCTTGCGTCAAACTCCCAGTCGCGCCGATGAATAGATTCCACCAAGCTAGGGTAAACGTAACCGCACCATAaagctataaaacaaaaattcatcCGCCATGTCAAACTACGCCACTTCCTAAAGTCACGctactctaaaaaaaaaaaaaaaagctcacgGCGACAAGCATTTCCCACAGGGACAATGTATCGTATCGTACACTTTGATCATCTCAATCGAAgggaaaatgaattaaaaaaagagctgcAAGAGCTCAGGCGACGTTGATTATTCGGGAAAAGGAGCTCAGTCCTTCAGTCCCGTCTCTGTACATCCCGAATCAAGGAGCTTTGCTTCTCAAAGGGATATGGATATCATGATGTCATTAATTGAGGACTTAATTGTCATGCTAATCCAgttgaggaggaggaggaggaagaagagaaagGCTTTTCTTCATGTCTAATCATCTTAACGCTACGCTGCACGTATTATCTGTCTCCACGTCTCATTTCTCCCTGTAATACAGCAGATACATCTTCAGGGGTTCAGGTAACGGTAGTCTTAGAATCTTCTCCCTCAGAATATTAACGGGAGGCTCTGCACGAGCGCAGccgcttttgtttttgtcctctTCGGTGCCGCCGCATTCGTCCTCGTCCTCCTCGGGCAGGTCTTCTCTCACTCGCCGACAACctctttcctcttcctcctccacttcctcttcttcctcttccactCCTCCGGGGTAGTTGCAGTCGTCCATGGCTGTGGGAATCATGGAGTCGTGGAGAACCACGGAGTTGACGCACTGGCGGTAGAAACGCCGGCAGAAGCGGCGGCGTTCGAAGCGGGGCCCGTAGCGGTGCATGGCCCGGGCCCCTGGGAAAGACACGCGTCTCTTTGTGCGTCCTTCTCCCATAGCTATGGGCTGCCGCAGAGTGTGGCGAATAGCAATCCGACACAGGTCCTGTAGTGTCCGCACCTCAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230545 lncRNA downstream 2375 7766248 ~ 7817371 (-) True G155670
TU230451 lncRNA downstream 335541 7483923 ~ 7484205 (-) True G155629
TU230450 lncRNA downstream 337254 7482027 ~ 7482492 (-) True G155628
TU230449 lncRNA downstream 339176 7479495 ~ 7480570 (-) True G155627
TU230446 lncRNA downstream 358444 7460929 ~ 7461302 (-) True G155624
TU230585 lncRNA upstream 120852 7973103 ~ 7973325 (-) True G155698
TU230649 lncRNA upstream 324448 8176699 ~ 8177518 (-) True G155737
TU230697 lncRNA upstream 455028 8307279 ~ 8382607 (-) True G155759
TU230759 lncRNA upstream 674151 8526402 ~ 8532927 (-) True G155803
TU230786 lncRNA upstream 772675 8624926 ~ 8625642 (-) True G155825
XM_043224007.1 mRNA downstream 31459 7784305 ~ 7788287 (-) True LOC122328356
XM_043224442.1 mRNA downstream 37029 7774301 ~ 7782717 (-) True kif3b
XM_043224185.1 mRNA downstream 294245 7522064 ~ 7525501 (-) True npbwr2b
XM_043225083.1 mRNA downstream 477141 7310570 ~ 7342605 (-) False rgs19
XM_043225053.1 mRNA upstream 2053 7854304 ~ 7861354 (-) True LOC122328943
XM_043225052.1 mRNA upstream 9952 7862203 ~ 7866387 (-) True LOC122328942
XM_043224019.1 mRNA upstream 70002 7922253 ~ 7932104 (-) False tm9sf4
XM_043224018.1 mRNA upstream 70002 7922253 ~ 7932104 (-) True tm9sf4
XM_043225407.1 mRNA upstream 80192 7932443 ~ 7954995 (-) True LOC122329207
TU230401 other downstream 541423 7276448 ~ 7278323 (-) True G155596
TU230379 other downstream 816259 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 822937 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 837957 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 952465 6864425 ~ 6867281 (-) False ccm2l
unassigned_transcript_2580 other upstream 333646 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 333944 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 334566 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 334866 8187117 ~ 8187210 (-) True trnai-uau_8
unassigned_transcript_2584 other upstream 336562 8188813 ~ 8188906 (-) True trnai-uau_9

Expression Profile