RNA id: TU230545


Basic Information

Item Value
RNA id TU230545
length 2390
lncRNA type read_through
GC content 0.41
exon number 2
gene id G155670
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7766248 ~ 7817371 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGTATAAGGCCCACCATGGTGCTGAGATAACCCGTCCCGCTGCCCAGATTGAGAAAAGACAGGCCAGGCTGCAGATCCAGGGCCTCCATCACCTCAGAGTAGATGCACGGAGCAGACAGATGGAGGTTTCCATGTCTCCAGGCCAGGTCTTTATACGCACTGTCACGGTACTCCTCCAGGTAATAGTCTGCTCTGTCAATGGCTCGGAAGGCCCTCTCCACCAGATCCGAGCGGATGTAATGGGCCTCCTTCAGGTTGTCAATCAGCTCGTCGTTGTCCTCGCCTGCGCTCACGGCTCCACCCATGACCAAAACAGAAGAGCTTCTAAGACCGGTCCCGATGCGCGCCTATCGCTGTCTGGAGGGGGAAACGCAAAGCATCTCGGATCAAACCCGGAGTAAGTTGACGCTAAAGCGATATTGAGCTTTGTACcatttataaacaaacacagaatgtgacatattaaataacaaacacGAAGATCACCTAATCGATACCTAATTACCTAAGACCTAAACACgtatgcattaataataatcaaacagTTTTAggattatgttttatttagtcgTAAATGACACCTGCAACAGACTCCTGCGCCTAGCAGGTGGGAAGAAAGCAAAGAATGATAATTAAGACAGTTAAATCTTTAATGAGACGCAGCATGGCGGATATCTGAGTACGCCAACTAACTTGACAATAAGACTCACGCTTGCCTTCAGCTCCTTCCCTCACACTCTATTTTTAGAGGTCAGACAAAGCCCAGTAAAAAGTGGCACACTGTTGCGTCCCGACCTGAACTCTAGGCAgcaacttttgtttgtttgtcactTTGGCAGGGAGACGAAGAGCACACGGGCAGCTGACGCGTTATATATCTATGGACTTNCAaaaaaaaaattttggataaaaatttagataaatgcatttattggtGCCGTTACGGTTTATCATTTCTTGTACGTTTTGTACAATTTCAACCATTTTATTCAGTACTTTTCATCTTATCCCATggttatttgataaataaagttCGTTCGAAAtagttttaaaagaacatttatttgaaatgtaaatattgtgtaaCTTCACTAATGTCTTTTCGGTCACTTCTGCTCAATTATCGAGTCCTTTTTTGAGTTATTCAGCAGTTATTATTAGTCTGCTGAATAAAACCTACCCCAAAATTTGTTGCATTTGTGCtacatttaatattcaaagGTACTGTTATTAATGCGTTATGAATaagacataaaacaataagTAAGGTAAATCATGATCTCAGCACGTGCAAACATTATGAATTTGTAAACCGCAGGAAACTTTAATAAATACCTGACTGATTAATAACATAAATTTGCAAAATTTAGAGTActattacaataaattaaacaaaacaacagtaaaaacaaatatgacttTAGCCTTTCCCTCTCGAACTACTTGATGGCAAATAACCTAATGTTACCTCATTGTTTGCAACTTTTAGTCTGATTGAGCAACTTGGTAATTATTGACTCCatctttcattattattattatattttttacttttttgtttcaaCTGGGCTATCAATGgagtgcaataaataaatatgagctTTTAATGATGCATGCGTAGCAATTACGAAATAGCATTGTTcggtattattttgtttaaaaatatatagattttaacaaaacaataacgCAAACATGTCTGATAAGACAGAATTATAAGTCAAATGAAGTAACAAAAGCAACGACTAAAATATCAGGAATGCAAAATGGTGGGCTGTTCGCTTCTTTTAGTTGCCAGATAAGTTTCAATGGGACTGTAAAATCTCGCCATACAATTGCATTACATCACAAAGTCAGTTTCTTTGTCATTTAATCTAACAATTGAAATCGTAACAAACAACCGTGCAGCATGTGACACCACAGCACTGTGTTTGACACATGGAAGCGATCGTCGCATTCAGCGAAACAGTAGCAAAGCAAtcgcaaaacaacaacaacaacaacaacacatctGTAAAACACAGAGCAGCGACAAAACGCAAACGTGTTCGCGCAAAAACGACGCGCGGCTTCTACGCGCCGTAACCCAGTAACCGTCACATGTAGGTCACGTctgtattatacatttaacGACAGTTAGCTGCAGTCGGTCCGCGCACGAGGAGAAGCTTTGCACGGCCACCGACATAAACAAAAGGGTCTCCGCCACACTGGCACTCACTGCCGCCCCGCCGTCTACATCTCACCGTGTGATCTCGGACCTCAGCGGTTGTCTCGTCCAAACCAGCAATGTCCATCGATCACATCAACGCGCACGTCGTGTTTTTGGCTCCGGGCGCAATAAGGTCTAACTTGACTGCGAAAAAATTGACGCGATGTAAACATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230451 lncRNA downstream 282043 7483923 ~ 7484205 (-) True G155629
TU230450 lncRNA downstream 283756 7482027 ~ 7482492 (-) True G155628
TU230449 lncRNA downstream 285678 7479495 ~ 7480570 (-) True G155627
TU230446 lncRNA downstream 304946 7460929 ~ 7461302 (-) True G155624
TU230445 lncRNA downstream 306468 7459531 ~ 7459780 (-) True G155623
TU230540 lncRNA upstream 2375 7819746 ~ 7852251 (-) True G155669
TU230569 lncRNA upstream 17191 7834562 ~ 7836538 (-) True G155684
TU230570 lncRNA upstream 17191 7834562 ~ 7836538 (-) False G155684
TU230571 lncRNA upstream 17191 7834562 ~ 7836538 (-) False G155684
TU230585 lncRNA upstream 155732 7973103 ~ 7973325 (-) True G155698
XM_043224185.1 mRNA downstream 240747 7522064 ~ 7525501 (-) True npbwr2b
XM_043225082.1 mRNA downstream 423549 7310570 ~ 7342699 (-) False rgs19
XM_043225083.1 mRNA downstream 423643 7310570 ~ 7342605 (-) False rgs19
XM_043225085.1 mRNA downstream 423690 7310570 ~ 7342558 (-) False rgs19
XM_043225084.1 mRNA downstream 423717 7310570 ~ 7342531 (-) True rgs19
XM_043224571.1 mRNA upstream 4751 7822122 ~ 7832584 (-) True LOC122328712
XM_043225053.1 mRNA upstream 36933 7854304 ~ 7861354 (-) True LOC122328943
XM_043225052.1 mRNA upstream 44832 7862203 ~ 7866387 (-) True LOC122328942
XM_043224019.1 mRNA upstream 104882 7922253 ~ 7932104 (-) False tm9sf4
XM_043224018.1 mRNA upstream 104882 7922253 ~ 7932104 (-) True tm9sf4
TU230401 other downstream 487925 7276448 ~ 7278323 (-) True G155596
TU230379 other downstream 762761 7000585 ~ 7003487 (-) False LOC122329304
TU230386 other downstream 769439 6994181 ~ 6996809 (-) False LOC122329304
TU230394 other downstream 784459 6966827 ~ 6981789 (-) False LOC122328436
TU230380 other downstream 898967 6864425 ~ 6867281 (-) False ccm2l
unassigned_transcript_2580 other upstream 368526 8185897 ~ 8185988 (-) True trnai-uau_5
unassigned_transcript_2581 other upstream 368824 8186195 ~ 8186288 (-) True trnai-uau_6
unassigned_transcript_2582 other upstream 369446 8186817 ~ 8186910 (-) True trnai-uau_7
unassigned_transcript_2583 other upstream 369746 8187117 ~ 8187210 (-) True trnai-uau_8
unassigned_transcript_2584 other upstream 371442 8188813 ~ 8188906 (-) True trnai-uau_9

Expression Profile