RNA id: XM_043224616.1


Basic Information

Item Value
RNA id XM_043224616.1
length 1056
RNA type mRNA
GC content 0.44
exon number 3
gene id sst6
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8921564 ~ 8926751 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCCTTAATACTACAAGGACTCCAGAGATATATttctactaaatatattttgggtAGAATATGTTAATGCTGTTGACAATGATGCTAATGCTTGAAATGGTAGGTTTAAGTATGTCCATGGCCTGATTAGTCAGGAAAAGAACGTCTCAGAGATTCAAAGCCACTTCAAACAGAGGGCACACTGGAACTGGGCGGTGTAGAATAGGGTAGTGAAGCAGTCGTAGGCGAATGATGCTGAGTCATCATGGTGAACAAGGCAATTCAGTGCAGGGAGAGTCAGGACAGGAAGTGGACACCCTGTTTTGAGCCGTCTGCTGATTAATTATGCATCGGATGGGGAGGAGTCTGGCTAGAGATGAAGTCTGACACAAACACGGGATGCTGCAGTTTGAACCGACAAGTACCAAAGATCAACACTTCCTTTAAAAGCTGaaGTACCTCTCTGAAACATGACGATGGGAGTTAGATGGGACAACCGTGCGGCGGCGGACAGAAGCATGTTCATAATGCGGATGATGCTGAGCCTGTTTCCTTTGATCCTTGTGATCTGGAATGGTGAGGCGCTACCCGTCCAAGACCAGCAATCACACAACAATGAGATACTGGCCAAAGGTCAGGAGGACTTGTTGAAGAAGATGATGACGGATATGGCTGAGCTGAACCTCACCAGTAAAGAACTAGCTGATCTTGACCCTGGATTTCTGAATGGCAAACTGGGAGAACAATCTGTTTATGAACCGACTCCTAAATCTCCATGCAAGCTGTTCTTCTGGAAGAGCTTCTCTTCGTGTTAAAACCCGGAAAACAGAACAGACACAGATAAGTCTGTTGAAATCTACAGTCCTGCCTTTACAGTTTGCCAGTCTCGCCATAGTGAAATCAACACGTATCCATAGGCTTCTGCTGTGCCTGTACTTTATTTAAGGACCGTTAAAAGAATGCAACGGGTTATTGTTTgatgtaaaacacaaaaaatacagtgGCCTTTTGCATGTACACTTTCTACTGTTTGACATCCAAGcccaaaataatgtaataaatgttccACAAATCCT

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230942 lncRNA downstream 296073 8628699 ~ 8629103 (-) True G155933
TU230786 lncRNA downstream 299534 8624926 ~ 8625642 (-) True G155825
TU230759 lncRNA downstream 392249 8526402 ~ 8532927 (-) True G155803
TU230697 lncRNA downstream 542569 8307279 ~ 8382607 (-) True G155759
TU230649 lncRNA downstream 747658 8176699 ~ 8177518 (-) True G155737
XR_006247890.1 lncRNA upstream 143633 9070384 ~ 9072944 (-) False LOC122329247
XR_006247891.1 lncRNA upstream 143633 9070384 ~ 9072938 (-) True LOC122329247
TU230977 lncRNA upstream 152782 9079533 ~ 9097263 (-) False ctnnbip1
TU230983 lncRNA upstream 226329 9153080 ~ 9153502 (-) True G155968
TU231000 lncRNA upstream 261762 9188513 ~ 9188897 (-) True G155979
XM_043224611.1 mRNA downstream 5406 8913064 ~ 8919770 (-) False c23h1orf127
XM_043224607.1 mRNA downstream 5413 8913063 ~ 8919763 (-) False c23h1orf127
XM_043224606.1 mRNA downstream 5451 8913063 ~ 8919725 (-) False c23h1orf127
XM_043224605.1 mRNA downstream 5451 8913063 ~ 8919725 (-) False c23h1orf127
XM_043224604.1 mRNA downstream 5451 8913063 ~ 8919725 (-) False c23h1orf127
XM_043225279.1 mRNA upstream 752 8927503 ~ 8933579 (-) True pgd
XM_043224247.1 mRNA upstream 7729 8934480 ~ 8997506 (-) False kif1b
XM_043224244.1 mRNA upstream 7729 8934480 ~ 8997506 (-) False kif1b
XM_043224238.1 mRNA upstream 7729 8934480 ~ 8997506 (-) False kif1b
XM_043224251.1 mRNA upstream 7729 8934480 ~ 8997506 (-) False kif1b
XR_006247823.1 other downstream 5451 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 5451 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 296785 8625758 ~ 8628391 (-) True G155827
TU230763 other downstream 373199 8545394 ~ 8551977 (-) True G155807
unassigned_transcript_2616 other downstream 719660 8205423 ~ 8205516 (-) True trnai-uau_41
XR_006247818.1 other upstream 269476 9196227 ~ 9209964 (-) False ccdc187
TU231373 other upstream 875034 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 875034 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 905377 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 905377 9832128 ~ 9833682 (-) False zgc:153284

Expression Profile