RNA id: TU231107


Basic Information

Item Value
RNA id TU231107
length 461
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G156054
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9607488 ~ 9607948 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taatttaattacagtggtaatattgttgtttttactgtagaTAATCCATGTAACTAACCATGTAACACACTAGTATCCTGTGCAACTGTGCTGTTGATTCGTGAAGGGGTGAAGTTCTTCTGCCCATTAATACGGTTGCGAGACATAGGAATCGGAGCTGTACTGACATCAGGAGGGCCGCTGCTCTTCTGCCTGACCAAGGCATTAGTTGGGAGCAGAAAACGGGCATATGACACTGTCTGCAACGCAAAACATTACACTAATCAgtgtaaacacaaacatatacattgCACAAAACGCACACCCAGTGACCTGGTACTGCACCTTGCACATTGATGCTTTAAAACAGATAGTAATACGCCACTAAGTAAACAAACTAGACGGTTTCTAAGACACATAATCATGTCTTTGCTCAATTTTCTTAGAGAAATACCTTTCCAAAGTCCACCTCCACTCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231104 lncRNA downstream 5011 9601962 ~ 9602477 (-) True G156051
TU231000 lncRNA downstream 418591 9188513 ~ 9188897 (-) True G155979
TU230983 lncRNA downstream 453986 9153080 ~ 9153502 (-) True G155968
TU230977 lncRNA downstream 510225 9079533 ~ 9097263 (-) False ctnnbip1
XR_006247890.1 lncRNA downstream 534544 9070384 ~ 9072944 (-) False LOC122329247
TU231109 lncRNA upstream 4302 9612250 ~ 9612596 (-) True G156056
TU231365 lncRNA upstream 70313 9678261 ~ 9815494 (-) True G156235
TU231378 lncRNA upstream 174160 9782108 ~ 9831125 (-) True G156245
XR_006247820.1 lncRNA upstream 259972 9867920 ~ 9877168 (-) True LOC122328702
TU231404 lncRNA upstream 343195 9951143 ~ 9952031 (-) True G156261
XM_043223962.1 mRNA downstream 45365 9549124 ~ 9562123 (-) True myt1a
XM_043224327.1 mRNA downstream 59146 9543486 ~ 9548342 (-) True pcmtd2a
XM_043224328.1 mRNA downstream 59149 9543486 ~ 9548339 (-) False pcmtd2a
XM_043225411.1 mRNA downstream 79353 9526592 ~ 9528135 (-) False thap3
XM_043224521.1 mRNA upstream 7585 9615533 ~ 9621872 (-) True LOC122328677
XM_043224520.1 mRNA upstream 14505 9622453 ~ 9633367 (-) True osbpl2a
XM_043224479.1 mRNA upstream 54465 9662413 ~ 9674637 (-) True LOC122328660
XM_043224540.1 mRNA upstream 153751 9761699 ~ 9764798 (-) True si:dkey-261l7.2
XM_043224464.1 mRNA upstream 159591 9767539 ~ 9798417 (-) False LOC122328653
XR_006247818.1 other downstream 397524 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 680878 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 687763 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 687763 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 979097 8625758 ~ 8628391 (-) True G155827
TU231373 other upstream 193837 9801785 ~ 9808232 (-) False hmgn3
TU231374 other upstream 193837 9801785 ~ 9808369 (-) True hmgn3
TU231375 other upstream 224180 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 224180 9832128 ~ 9833682 (-) False zgc:153284
TU231501 other upstream 622598 10230546 ~ 10231919 (-) False ankrd52a

Expression Profile