RNA id: XM_043224552.1


Basic Information

Item Value
RNA id XM_043224552.1
length 953
RNA type mRNA
GC content 0.40
exon number 6
gene id hmgn3
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9801785 ~ 9808369 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTGCATAATATTAACATGTTATTACCAGAGGTGTTTTAGATATTGATCCTGTATTCGGTGGTAGTTAAACTCACTCCCCCACCTCACAGGTCCATACCtgcttttctaatttaataagaCAAGTGACAGGAAATTTTGCAAAAATGCCCAAGAGGAAGTCACCCGAGGGAGCAGAGGCCAAAGACGCCACCAAAGTTACAAAGCAGGAGCCCACTCGGAGGTCAGAGCGTCTCTCCTCAAAACCAGCTCCTCCTAAACCTGAACCAAAAGCCAAAAAGCCAGCTGCCAAGaagCCATCCAATGACAAAGCGGTAAAGGAAAAGAAGGGCGGAGCcaaaggaaagaaagaggagaaagaatCTGCGCTCACTGCAAATGGAGAGACCAAGCCAGAGGAGatcTGTGTCTCACGCTCATCTGTCAGTGTGTCATCATGGAGAAGTTCCGCCCCCTCCTTCCTGTCCATCCGAGGGCAGAGTGAGAGTGTTAGAGTAAAGGGTATGAGAGTTTGAAGACTGCAGTGTGTGCTTGCGTGCTCAGCCATCTCTTTATCTGAGactataaaaaaactgaattaattacATTGTGAACGATTGGTAAAGAACGGTACTATAATGTTCATTACAGTGTGcattcattttgatattatagATCATAACTTAAGAATTTTGAAGTGTTGTATTCTAGAGTGTACCCAATCGCAAAAACATTCAGTGGTCCGCTGTCCACGTAAGATTAGgatataaaagtatttgtttaaaaatacacacgTTACCTTGAattgaattcattaaaatataagttGATTTCcttataattacataaatgtaagAACATAAATGCACTCTTCTGTTTTGTCATGTTGTTTATTATAAAGGAGGTTGTTGAGTTTTTAAAGAAGTAGTTcccctaaaaatgaaaaaaagctgaaagTTGTACTTACTCACAGGC

Function

GO:

id name namespace
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0031492 nucleosomal DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231109 lncRNA downstream 190747 9612250 ~ 9612596 (-) True G156056
TU231107 lncRNA downstream 195395 9607488 ~ 9607948 (-) True G156054
TU231104 lncRNA downstream 200866 9601962 ~ 9602477 (-) True G156051
TU231000 lncRNA downstream 614446 9188513 ~ 9188897 (-) True G155979
TU230983 lncRNA downstream 649841 9153080 ~ 9153502 (-) True G155968
XR_006247820.1 lncRNA upstream 59653 9867920 ~ 9877168 (-) True LOC122328702
TU231404 lncRNA upstream 142876 9951143 ~ 9952031 (-) True G156261
TU231407 lncRNA upstream 208189 10016456 ~ 10017421 (-) True G156264
TU231431 lncRNA upstream 244259 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 249744 10058011 ~ 10059303 (-) True G156283
XM_043224464.1 mRNA downstream 4926 9767539 ~ 9798417 (-) False LOC122328653
XM_043224463.1 mRNA downstream 4927 9767539 ~ 9798416 (-) True LOC122328653
XM_043224540.1 mRNA downstream 38545 9761699 ~ 9764798 (-) True si:dkey-261l7.2
XM_043224479.1 mRNA downstream 128706 9662413 ~ 9674637 (-) True LOC122328660
XM_043224520.1 mRNA downstream 169976 9622453 ~ 9633367 (-) True osbpl2a
XM_043224476.1 mRNA upstream 3734 9812001 ~ 9822297 (-) False lca5
XM_043224478.1 mRNA upstream 3734 9812001 ~ 9822297 (-) False lca5
XM_043224475.1 mRNA upstream 3734 9812001 ~ 9822297 (-) True lca5
XM_043224553.1 mRNA upstream 23542 9831809 ~ 9833648 (-) True zgc:153284
XM_043224495.1 mRNA upstream 29168 9837435 ~ 9865787 (-) False eya4
XR_006247818.1 other downstream 593379 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 876733 8921564 ~ 8926610 (-) True sst6
XR_006247823.1 other downstream 883618 8913062 ~ 8919725 (-) False c23h1orf127
XR_006247824.1 other downstream 883618 8913063 ~ 8919725 (-) False c23h1orf127
TU230789 other downstream 1174952 8625758 ~ 8628391 (-) True G155827
TU231375 other upstream 23861 9832128 ~ 9833633 (-) False zgc:153284
TU231376 other upstream 23861 9832128 ~ 9833682 (-) False zgc:153284
TU231501 other upstream 422279 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 428829 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 557276 10365543 ~ 10367369 (-) False LOC122328779

Expression Profile