RNA id: XM_043224553.1


Basic Information

Item Value
RNA id XM_043224553.1
length 757
RNA type mRNA
GC content 0.35
exon number 3
gene id zgc:153284
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9831809 ~ 9833682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGCTTTCCTGGTCCTTGAGTTGGCAGAGATTACCTTTTGATTTAAAGGTTTAAACAACGAACTGCTTCTTCAGCCACTTTTATTCTCAACAAAACTTTTAGCACGTTCAGAAGATGCCCGTCACAGTGTATTTCAGCAGTGTGAGTGGCTCTAGAGAGGTGAAGCAACATCAGGCACACATCCTGCAATTCCTGGATTCCAAGAATATCAAGTACTTTGTTGTGGACATCGCTGAAAGTGGTGCTTTGAAGGAGGAGATGAGGAAGAAAGTGGGAAACCCCGCAGCTTTGCCTCCTCAGGTCTTTAATGGAGACAAATATTGTGGGgACTATCAGAAATTTTCTGATGCGGTGGAGGATGGAAAAGCAGAGGCATTCTTCAAACTCTGAACTACTATTGGCACACTTCACTAaatccttgtgtatttaagatTATATATGTTAAgacattttacattgtttaataataataataataataataataataataaaaaagggaTTTTCTATCAAGCGTATCTCTGCTACATTATGCATCAGTACATACAGTATCACCTTCCATATTTGTCCACTGGGGTGCAGTAGTGTCTTGAGTACCTCAAATATATGAACTATTGGTGCATTTAATCAACTTGATGCATTTCAAGCATTGattcttcttaaaaattctTCATTGTTCTGacttatcttttaaaaatcagaaTTGATGtaatcaaaattttatttcaattaaactaatatatacataatactaTT

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K23740 SH3BGR; SH3 domain-binding glutamic acid-rich protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231378 lncRNA downstream 684 9782108 ~ 9831125 (-) True G156245
TU231365 lncRNA downstream 16315 9678261 ~ 9815494 (-) True G156235
TU231109 lncRNA downstream 219213 9612250 ~ 9612596 (-) True G156056
TU231107 lncRNA downstream 223861 9607488 ~ 9607948 (-) True G156054
TU231104 lncRNA downstream 229332 9601962 ~ 9602477 (-) True G156051
XR_006247820.1 lncRNA upstream 34272 9867920 ~ 9877168 (-) True LOC122328702
TU231404 lncRNA upstream 117495 9951143 ~ 9952031 (-) True G156261
TU231407 lncRNA upstream 182808 10016456 ~ 10017421 (-) True G156264
TU231431 lncRNA upstream 218878 10052526 ~ 10053549 (-) True G156278
TU231439 lncRNA upstream 224363 10058011 ~ 10059303 (-) True G156283
XM_043224476.1 mRNA downstream 9512 9812001 ~ 9822297 (-) False lca5
XM_043224478.1 mRNA downstream 9512 9812001 ~ 9822297 (-) False lca5
XM_043224475.1 mRNA downstream 9512 9812001 ~ 9822297 (-) True lca5
XM_043224552.1 mRNA downstream 23542 9803343 ~ 9808267 (-) False hmgn3
XM_043224551.1 mRNA downstream 23543 9801841 ~ 9808266 (-) False hmgn3
XM_043224495.1 mRNA upstream 3787 9837435 ~ 9865787 (-) False eya4
XM_043224492.1 mRNA upstream 3787 9837435 ~ 9865787 (-) True eya4
XM_043224497.1 mRNA upstream 3787 9837435 ~ 9865786 (-) False eya4
XM_043224493.1 mRNA upstream 3787 9837435 ~ 9865786 (-) False eya4
XM_043224499.1 mRNA upstream 3787 9837435 ~ 9865785 (-) False eya4
TU231374 other downstream 23440 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 23577 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 621845 9196227 ~ 9209964 (-) False ccdc187
TU230970 other downstream 905199 8921564 ~ 8926610 (-) True sst6
XR_006247824.1 other downstream 912084 8913063 ~ 8919725 (-) False c23h1orf127
TU231501 other upstream 396898 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 403448 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 531895 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 842036 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 1267096 11100744 ~ 11105223 (-) True G156746

Expression Profile